PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00179.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 379aa    MW: 43033.7 Da    PI: 6.513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00179.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.67e-1993139148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++ WT+eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
   Pahal.B00179.1  93 KKQWTPEEDRKLVKLVEQFGLRKWSYIAQMLP-GRVGKQCRERWHNHL 139
                      678*****************************.*************97 PP
2Myb_DNA-binding47.25.1e-15147187345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W+ eEd  l++a+k+ G++ W+ Ia++++  Rt++++k++w+
   Pahal.B00179.1 147 IWSDEEDMVLIQAHKEVGNK-WAEIAKRLP-VRTENSIKNHWN 187
                      6*******************.*********.9**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.21888143IPR017930Myb domain
SuperFamilySSF466894.84E-3090186IPR009057Homeodomain-like
SMARTSM007173.8E-1592141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-3095147IPR009057Homeodomain-like
CDDcd001677.04E-1596139No hitNo description
PfamPF139212.6E-1896153No hitNo description
SMARTSM007173.3E-15144192IPR001005SANT/Myb domain
PROSITE profilePS5129417.843144194IPR017930Myb domain
CDDcd001671.13E-11148190No hitNo description
Gene3DG3DSA:1.10.10.606.2E-20148192IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
IGDYRSGSIL PSATFKDLQH FAERETKKPI FDQASSVSHR FDSQLHPLTP KTEVSHLIEN  60
GLGSYKAYDE MNGRFVPRKK TNSISLKKAN VVKKQWTPEE DRKLVKLVEQ FGLRKWSYIA  120
QMLPGRVGKQ CRERWHNHLR PNIKKDIWSD EEDMVLIQAH KEVGNKWAEI AKRLPVRTEN  180
SIKNHWNATK RRQFARRRSR TSSKQGPKSG TLLQNYIKGL GIGPSKNVIA PLAQPTLSPS  240
LEHNNPSNIL DSQGILSIHE QNYSKAESCE ELAVAPICDD FSIDMLCDSL FDTKEDTCFQ  300
VYTVDDDMDM NCIFNHVDHA IKVGCEIDME MMWDDEDGLG CVEEPAGSAQ IEAVNVKEEM  360
DLIEMVAVTQ KYGEAEKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-42911942105MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-42911942105C-Myb DNA-Binding Domain
1msf_C5e-42911942105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432521e-45AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.10.0transcription factor MYB41-like
TrEMBLA0A2T8KMF50.0A0A2T8KMF5_9POAL; Uncharacterized protein
STRINGPavir.J37434.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-58myb domain protein 98