PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00154.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 437aa MW: 45563.4 Da PI: 9.5226

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00154.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.2	7.4e-07	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H Pahal.B00154.1 83 YVCEICGQGFQREQNLQMHRRRH 105 9*********************9 PP
2	zf-C2H2	10.7	0.0016	177	199	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k + +s++k H++t+ Pahal.B00154.1 177 WVCARCAKGYAVQSDYKAHLKTC 199 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.51E-6	82	105	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	82	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.759	83	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	6.5E-4	83	105	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	141	171	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.51E-6	172	197	No hit	No description
SMART	SM00355	270	177	204	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MALLVKSHHQ MLASSSTSSS SPSASRQPPP PAAAAPPQPP SSSCLTDQQP SPAKRKRRPP 60 GTPDPDAEVV ALSPRTLLES DRYVCEICGQ GFQREQNLQM HRRRHKVPWR LVKRAPPGGG 120 EDGGANGSAT TGGGAPRKRV FVCPEPSCLH HDPAHALGDL VGIKKHFRRK HGGRRQWVCA 180 RCAKGYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE HQDACNSSRM RGEVAVTSTL 240 PVIRPAVPRP HPPAVAARPE LQLLPASSTA APVTTATALS TITAATTTAS QAEPHAAAAT 300 KLQLSIGPTV TTAASDGAAA AAVGGGEEDA EELSRAVEEK AEADAARERA RAEAAAAERA 360 LEEARRARQR ARADLEKACA LRDHAARLLA QVTCHACRQR SLLAMSVAAA VGEGHGHGGP 420 AVACDPVRGG GVGAGI*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MALLVKSHHQ MLASSSTSSS SPSASRQPPP PAAAAPPQPP SSSCLTDQQP SPAKRKRRPP  60
GTPDPDAEVV ALSPRTLLES DRYVCEICGQ GFQREQNLQM HRRRHKVPWR LVKRAPPGGG  120
EDGGANGSAT TGGGAPRKRV FVCPEPSCLH HDPAHALGDL VGIKKHFRRK HGGRRQWVCA  180
RCAKGYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE HQDACNSSRM RGEVAVTSTL  240
PVIRPAVPRP HPPAVAARPE LQLLPASSTA APVTTATALS TITAATTTAS QAEPHAAAAT  300
KLQLSIGPTV TTAASDGAAA AAVGGGEEDA EELSRAVEEK AEADAARERA RAEAAAAERA  360
LEEARRARQR ARADLEKACA LRDHAARLLA QVTCHACRQR SLLAMSVAAA VGEGHGHGGP  420
AVACDPVRGG GVGAGI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-16	173	227	3	57	Zinc finger protein JACKDAW
5b3h_F	1e-16	173	227	3	57	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376150	0.0	AK376150.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3116F03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795974.1	0.0	protein indeterminate-domain 16-like
Swissprot	Q9C9X7	1e-108	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A2S3ISJ0	0.0	A0A2S3ISJ0_9POAL; Uncharacterized protein
STRING	GRMZM2G074032_P01	1e-163	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	2e-88	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Pahal.B00154.1

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]