PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.B00146.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 171aa MW: 19707.1 Da PI: 8.7618 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43.5 | 1.1e-13 | 11 | 90 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kf+ +Y+ + GF+vrk++++ksk +g ke +r ++k++ ++ + +raetrt+C+ ++ + ++k ++ ++v++l+leHnHel Pahal.B00146.1 11 KFWLAYSGQSGFEVRKQYTNKSKIDG----------KESHRGKDKRS-DQVKCPRAETRTDCEVRMGLVNDKeTDGYKVYDLKLEHNHELH 90 69********************9999..........66666666666.7789**************98777769***************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.5E-9 | 11 | 90 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MKFTNPEEGW KFWLAYSGQS GFEVRKQYTN KSKIDGKESH RGKDKRSDQV KCPRAETRTD 60 CEVRMGLVND KETDGYKVYD LKLEHNHELH SPETFHLMVS QRKISKLQAF EIETADDSGI 120 DPKASHELAC RQVGGPLNLG YTLRDHKNYL RGKRQREMAY GEAGSMLQYF * |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008646034.1 | 1e-105 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2T8KVK9 | 2e-84 | A0A2T8KVK9_9POAL; Uncharacterized protein | ||||
STRING | BRADI2G59232.1 | 1e-75 | (Brachypodium distachyon) | ||||
STRING | OS10T0571900-00 | 1e-80 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-14 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.B00146.1 |