PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00098.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 281aa    MW: 29885.6 Da    PI: 9.1242
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00098.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.67.6e-17115167254
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa 
  Pahal.B00098.1 115 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRAS 167
                     788899*********************************************96 PP
2HD-ZIP_I/II115.62.9e-37115208191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA....RtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRA    Rtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +l
  Pahal.B00098.1 115 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRAsrarRTKLKQTEVDCEFLKRCCESLTEENRRLQRELQELR-AL 208
                     69*************************************************988889**********************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-18101165IPR009057Homeodomain-like
SuperFamilySSF466895.85E-17108167IPR009057Homeodomain-like
PROSITE profilePS5007116.52111171IPR001356Homeobox domain
SMARTSM003891.2E-14113175IPR001356Homeobox domain
PfamPF000463.0E-14115167IPR001356Homeobox domain
CDDcd000867.78E-14115173No hitNo description
CDDcd146860.00817162207No hitNo description
SMARTSM003409.3E-24175218IPR003106Leucine zipper, homeobox-associated
PfamPF021833.4E-11175209IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAQEDVHLDD AGLALGLSLG GGGASDAARR QGTGSRLGRE AARLPPSPRA LEPSLTLSMP  60
DEATATGSGG GGGAAAHSVS SLSVAGVKRE RVEEADGERA SSTARGEDDD DGSTRKKLRL  120
TKEQSALLED RFKEHSTLNP KQKVALAKQL NLRPRQVEVW FQNRRASRAR RTKLKQTEVD  180
CEFLKRCCES LTEENRRLQR ELQELRALKF AAPPGAPPPP AATAPAPAPF YMQLPAATLT  240
LCPSCERLSG PAAAAKADPD RPKAAPAHHF FNPFTHSAAC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119TRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0977881e-128FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797738.10.0homeobox-leucine zipper protein HOX19-like isoform X1
SwissprotA2XE761e-107HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-107HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A2S3ISP90.0A0A2S3ISP9_9POAL; Uncharacterized protein
TrEMBLA0A2T7CFD70.0A0A2T7CFD7_9POAL; Uncharacterized protein
STRINGPavir.J25440.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-54homeobox from Arabidopsis thaliana