PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00089.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 617aa    MW: 66424.7 Da    PI: 6.8674
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00089.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392.1e-12279335155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +  +g  rk  + g ++t+++Aa+a++ a++k++g
  Pahal.B00089.1 279 SRYRGVTRHRWTGRYEAHLWDnSCRkDGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 335
                     79*******************54445554335555.77***99*************98 PP
2AP246.68.8e-15378429155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW ++I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pahal.B00089.1 378 SIYRGVTRHHQQGRWQSRIGRVAG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 429
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-10279335IPR001471AP2/ERF domain
CDDcd000185.68E-18279344No hitNo description
SuperFamilySSF541712.03E-14279345IPR016177DNA-binding domain
PROSITE profilePS5103217.833280343IPR001471AP2/ERF domain
SMARTSM003801.6E-21280349IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-12280344IPR001471AP2/ERF domain
PRINTSPR003674.5E-6281292IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-17378438IPR016177DNA-binding domain
PfamPF008471.1E-8378429IPR001471AP2/ERF domain
CDDcd000181.77E-23378439No hitNo description
PROSITE profilePS5103218.597379437IPR001471AP2/ERF domain
SMARTSM003806.0E-31379443IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-18379437IPR001471AP2/ERF domain
PRINTSPR003674.5E-6419439IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MGEMASGSNW LGFSLAPHTA MEVPNASEPA PAHHAPPPTS TTISSSGNNA AATSNFLFSP  60
MAAPYPGYYC VGGAYGDGTS SAGVYYSHLP TVPIKSDGSI CSIEGMMPSS PPKLEDFLGG  120
GNGNGGGQET ATYYSHQQGQ EEEASRDYHQ YQPHQLVPYN FQPLTEAEML QEDAAPIDEA  180
MAAAKNFLLT SYGACYSNGE MHPLSLSMMS PGSQSSSCVS AAPQQQQHQM AAAASAAAAQ  240
GRSNGGGEQG VGRKRGTGKG GQKQPVHRKS IDTFGQRTSR YRGVTRHRWT GRYEAHLWDN  300
SCRKDGQTRK GRQGGYDTED KAARAYDLAA LKYWGPATHI NFPVENYQDE LEEMKSMTRQ  360
EFVAHLRRRS SGFSRGASIY RGVTRHHQQG RWQSRIGRVA GNKDLYLGTF TTQEEAAEAY  420
DIAAIKFRGL NAVTNFDITR YDVDKIMESS TLLPVEEARK VKAIEATNGV PMMHNNGSRE  480
LNPAEETSAD WRMVLHGSSQ EAVHCPEAVD PQKGIMTHSS LHGIVGLDVS CVAHDHHLDV  540
PGKSGGVNFS NSSSLVTSLG NSREGSPERL GLAMMYGKQQ PHAVSLAAMS PWMPMPAPAA  600
QHVASHLPVF AAWADA*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796858.10.0AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z021e-135CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A3L6SCT80.0A0A3L6SCT8_PANMI; AP2-like ethylene-responsive transcription factor ANT
STRINGPavir.Ia03990.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-103AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]