PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B00063.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HSF | ||||||||
Protein Properties | Length: 423aa MW: 46971.6 Da PI: 4.9743 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.3 | 5.8e-34 | 50 | 142 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d++++ +isw + g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++ we++++ F k++k+ll++ Pahal.B00063.1 50 FLTKVYDMVSDPATDAVISWAAGGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WEWANEGFVKDQKHLLKT 135 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 ikrkk++ Pahal.B00063.1 136 IKRKKKS 142 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.4E-54 | 46 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.99E-33 | 46 | 139 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.3E-36 | 47 | 139 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.0E-17 | 50 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.2E-30 | 50 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-17 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-17 | 101 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MGSKKRSPQR PASPAGGEVA GDVGAPLAGK APPAAAPVGV VPKPPDVAPF LTKVYDMVSD 60 PATDAVISWA AGGGSFVIWD SHAFERDLLP RHFKHNHFTS FIRQLNTYGF HKVDPDRWEW 120 ANEGFVKDQK HLLKTIKRKK KSAQDATSDL QPAPVKTAPG TENIEIGKYG GLEKEVETLK 180 RDKALLMQQL VDLRQYQQSS SLEVQNLIQR LHVMEQNQQQ MMALLAIVVQ NPNFLNQLVQ 240 QQRRSNWWND DGSRKRRFRA LEQGHVADQE TSVAGAQIIQ YHPPIPETSN QVIRVNGAFS 300 PTTAQPVSSP ETAMPMDVET TSNSVDPLAS TGDLLPNTSA LSGWDDMFLG CEIEDILPSE 360 QDFQMGEQQN SQVEPPLTVE DYTEYPVFHT SQLEQEQQLQ DCQMEAQQGH KNLQYADIIT 420 EA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-23 | 44 | 143 | 14 | 124 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043189 | 0.0 | BT043189.1 Zea mays full-length cDNA clone ZM_BFc0119D19 mRNA, complete cds. | |||
GenBank | EU960909 | 0.0 | EU960909.1 Zea mays clone 229513 heat shock factor protein HSF8 mRNA, complete cds. | |||
GenBank | JX428499 | 0.0 | JX428499.1 Zea mays subsp. mays clone pUT3097 HSF14 HSF type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795547.1 | 0.0 | heat stress transcription factor A-9-like | ||||
Swissprot | Q10PR4 | 1e-179 | HSFA9_ORYSJ; Heat stress transcription factor A-9 | ||||
TrEMBL | A0A2S3ISS5 | 0.0 | A0A2S3ISS5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib00928.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11494 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 6e-71 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B00063.1 |
Publications ? help Back to Top | |||
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