PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A04007.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 693aa    MW: 75452.3 Da    PI: 4.5572
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A04007.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07107129427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C +f++ G C  GdrC F+Hgp
  Pahal.A04007.1 107 VPCYYFQK-GMCAKGDRCAFSHGP 129
                     69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.7E-41442IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6951443IPR000571Zinc finger, CCCH-type
PfamPF156638.7E-121569No hitNo description
PROSITE profilePS5010311.0284571IPR000571Zinc finger, CCCH-type
SMARTSM003562.54770IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037103130IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-6104129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5106128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4108129IPR000571Zinc finger, CCCH-type
PfamPF146080.29108128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MDSAARPDEE EARRRRSTDC IYFLASPLTC KKGSECEFRH SDAARMNPRD CWYWFNGNCA  60
NPKCSFRHPP LDNLLGAPTT PRAPQQPAQQ VSVPAQAHGS IPAKQGVPCY YFQKGMCAKG  120
DRCAFSHGPQ PAGNPAPQPP PAAKIFAPAL QPNSQLKNSW TKPNSSGQQN TPAGIPDKSK  180
LSTHDAKPVQ KQHVTSRVDH SSRTYQNHSN SYAQSGTTKH YQPQPSVQDG LNENGMEAGE  240
FVREPSAGSG VLVGGVDDDS EQSFKGNRSS YHHHTSHGGY APERSYRSSA ERLSSDKRIS  300
EQEPMPAVIA GSSDLRHRLL KQRRLNNNLG STGAPDMNDS CLEGERNDQR RWRGEEHDGS  360
LPRSRLRDRI RLPGATSFDR HGSRSEKEWD RAPRGRLSPP EHSDLRGKLH ERLKVRSAEE  420
IPVNSVKSSV VKASSGEDAE SLNFAGPKSL AELKAKKGGA SSSQGEAIVK GVGLSRVTSG  480
IISSREPAPF EGPKPLSAIL KRKREVASED AAAHFGSIQE EDNAAGVDEE SQILADDTVE  540
ENMEGNTAAE EEGEEEAFHP EDDVAYDDNA DEATGQELEE HQDVETAGEG EDSDYEAADT  600
NAAAGQELEG HQDAEAVTED YDYEAADANA NSNAAAGQDL QDVEAAAEDY DYEAADVNAE  660
EDNEYHEYQD DDDDLEDDDD DDFARKVGVM IS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9753421e-99EU975342.1 Zea mays clone 488116 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805705.10.0zinc finger CCCH domain-containing protein 19-like
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A2S3GUW50.0A0A2S3GUW5_9POAL; Uncharacterized protein
STRINGPavir.Ab03367.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]