PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03780.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 289aa    MW: 31998.9 Da    PI: 7.0291
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03780.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.95.7e-51101421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lppGfrF P+deelv++yL+ kv+++++  +   + evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksgyWkatgkd+ +++
  Pahal.A03780.1  10 LPPGFRFYPSDEELVCHYLHSKVANERIAGAGGaMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGKDRVIHN 104
                     79*************************8776555***************87788999*************************************9 PP

             NAM  95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +  +vg++ktLvfy+grap+g kt+Wvmhe+r+
  Pahal.A03780.1 105 PkaagRAVVVGMRKTLVFYRGRAPNGIKTSWVMHEFRM 142
                     877766677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-597161IPR003441NAC domain
PROSITE profilePS5100557.22610161IPR003441NAC domain
PfamPF023658.3E-2811142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHS KVANERIAGA GGAMVEVDLH THEPWELPDV  60
AKLSTNEWYF FSFRDRKYAT GLRTNRATKS GYWKATGKDR VIHNPKAAGR AVVVGMRKTL  120
VFYRGRAPNG IKTSWVMHEF RMENPHTPPK EDWVLCRVFY KKKADAMDYA MDSEQDVAMP  180
HSADHPSYSP PFPALGSSHY HLPPPSSDHH GGAGAGSLND FPAAMALLHH QHNSMFNFPA  240
QPHDGGNVLA AAGSRDGSGA GDQCGSGVLM DLGLDEHYNY NYNSLMQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-4811664169NO APICAL MERISTEM PROTEIN
1ut4_B8e-4811664169NO APICAL MERISTEM PROTEIN
1ut7_A8e-4811664169NO APICAL MERISTEM PROTEIN
1ut7_B8e-4811664169NO APICAL MERISTEM PROTEIN
3swm_A8e-4811667172NAC domain-containing protein 19
3swm_B8e-4811667172NAC domain-containing protein 19
3swm_C8e-4811667172NAC domain-containing protein 19
3swm_D8e-4811667172NAC domain-containing protein 19
3swp_A8e-4811667172NAC domain-containing protein 19
3swp_B8e-4811667172NAC domain-containing protein 19
3swp_C8e-4811667172NAC domain-containing protein 19
3swp_D8e-4811667172NAC domain-containing protein 19
4dul_A8e-4811664169NAC domain-containing protein 19
4dul_B8e-4811664169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9649730.0EU964973.1 Zea mays clone 282884 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824302.10.0protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9FLJ21e-59NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2S3GUT50.0A0A2S3GUT5_9POAL; Uncharacterized protein
STRINGPavir.J34679.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.15e-79NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]