PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A03753.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 195aa MW: 21579.5 Da PI: 8.857 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.7 | 7.9e-17 | 48 | 94 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR++iN+++ L++l+P++ K +Ka++L A+eY+k+Lq Pahal.A03753.1 48 VHNLSEKRRRSKINEKMKALQTLIPNS-----SKTDKASMLDDAIEYLKQLQ 94 6*************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-20 | 41 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-21 | 42 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.993 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.28E-15 | 47 | 98 | No hit | No description |
Pfam | PF00010 | 2.2E-14 | 48 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.1E-19 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDAQQLDLFL RHQSMANICE SEDALGSSES EPARPARPRG KRSRAAEVHN LSEKRRRSKI 60 NEKMKALQTL IPNSSKTDKA SMLDDAIEYL KQLQLQVQML SMRNGLYLPP ANLSGVPEAL 120 APSEVCATLN QRHELKLASQ ETCMVNSGRF DRGSQRKEVA RDMMPKNTES VLLMPYLHSL 180 QSGDANGGLR AESS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033382 | 1e-152 | BT033382.1 Zea mays full-length cDNA clone ZM_BFb0041N16 mRNA, complete cds. | |||
GenBank | BT064056 | 1e-152 | BT064056.1 Zea mays full-length cDNA clone ZM_BFc0135E23 mRNA, complete cds. | |||
GenBank | KJ726988 | 1e-152 | KJ726988.1 Zea mays clone pUT3689 bHLH transcription factor (bHLH168) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804964.1 | 7e-89 | uncharacterized protein LOC112883903 isoform X2 | ||||
TrEMBL | A0A2T8KY92 | 2e-87 | A0A2T8KY92_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J11618.1.p | 8e-86 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3336 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 4e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A03753.1 |