PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03688.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 401aa    MW: 40190.6 Da    PI: 5.6546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03688.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12204249555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Pahal.A03688.1 204 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 249
                     99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-17197258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-13197253No hitNo description
PROSITE profilePS5088817.39199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16201258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9204249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MQPSGREMQG GGGGGQDDFF DQMLSTLPAA WSELGSGKSP WELPAGASED AAFDESALLA  60
SRLRHHQIGG GGDKPVMLHL SDLHGLAAGV EDGGAAGFLP LPLFTDRARE DMDATFKSPN  120
AVGGDQTLYN GFGAAGMHGA AAVQPQFGQG GSMPAQSFGG GAAARGGGSA PAGAPAAGAS  180
SGGGAAPPRQ QRVRARRGQA TDPHSIAERL RRERIAERMK ALQELVPNAN KTDKASMLDE  240
IIDYVKFLQL QVKVLSMSRL GGAAGVGPLV ANMSAEGNGN GNATSDSGDG NAANGGGNGE  300
NGGGSLKVTE QQVARLMEED MGTAMQYLQG KGLCLMPISL ASAISSATSS SLLSRPSIGS  360
MGSARGPAHE GGNPASPPLM NGAGGDDSRT VKDAGAGSKQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809006.10.0transcription factor bHLH82-like
SwissprotQ9ZUG92e-73BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A2S3GUI20.0A0A2S3GUI2_9POAL; Uncharacterized protein
STRINGPavir.Ab03158.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-40LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]