PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03554.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 629aa    MW: 70160.9 Da    PI: 8.1662
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03554.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.4e-07511558347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT  E  +lvd+v+++G g W+ I +        Rt  ++k++w+++
   Pahal.A03554.1 511 AWTLCEVMKLVDGVARFGAGKWSEIRKLSFssySYRTSVDLKDKWRNL 558
                      7************************9999999*99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.147504563IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-11506561IPR009057Homeodomain-like
SuperFamilySSF466894.32E-14506562IPR009057Homeodomain-like
SMARTSM007171.6E-6508561IPR001005SANT/Myb domain
CDDcd116601.35E-17510560No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MEVGDSHGAV VNKSEENDFE KKGGSNPVVY QLVRVEGDGT LVPATEDDVL QFEHFLHDEK  60
VDLPSIEDVG HVEEFFSNDC ILLKKSDLED CSSKLKTIEL HTQKSGADLE ENRLQSMDDS  120
LSPPSKCSVV HVQQPDKFLT EQGDNSIAQQ NNASTETTKS TVLNDSCNAE KDKADARSRP  180
VDDTSTEPSV SGVNSSVPDF SILRGEVRLD DLTIRELQEA FRAIFGRQTT VKDKIWLKRR  240
ITMGLTNSCD VPSSGCVVKD YKIVGRDSNK DMPNTGEIPK IGLQATSLVR DQVILPGNEG  300
DSPSSYYYHS EDQQGSSKRF KRAPIHNEEP QVILAEQSTN KRTRKPTKRY IEELSDIETH  360
DSTGKLSSPA KRTARDEVLL KPRVVHFHEV ESLGTTYPTR KDTLGGFSVH VPYVSRTRRG  420
RPRKDFISFV DKEPFVEHNG VQTAVGMMLA KECEEGNHVR KTSEVPLTVN SGRGHIEAVD  480
RKRVQNLQPN VYNAASKPKI KRGLTRKHHR AWTLCEVMKL VDGVARFGAG KWSEIRKLSF  540
SSYSYRTSVD LKDKWRNLIR ATQTQLPAQK DGVCPRKINP SIIPIPPSIL LRVKELNELQ  600
SQGGGFTAPV KFSRQNGKVV QEKGSGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1417423RRGRPRK
2417424RRGRPRKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801371.10.0uncharacterized protein LOC112880841
RefseqXP_025801378.10.0uncharacterized protein LOC112880841
TrEMBLA0A2S3GTR10.0A0A2S3GTR1_9POAL; Uncharacterized protein
STRINGPavir.Aa00316.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.24e-84TRF-like 6