PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03550.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 248aa    MW: 26828.9 Da    PI: 11.9337
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03550.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA39.81.5e-121111363358
       CBFB_NFYA  33 ksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ++  pylheSRh hA++R+Rg gGrF
  Pahal.A03550.2 111 AATVPYLHESRHLHAMKRARGLGGRF 136
                     6678*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020451.8E-1061136IPR001289Nuclear transcription factor Y subunit A
SMARTSM005218.4E-681139IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115215.347115139IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MQSRGPESRP EEGTRGEVAR RRSSFARRTH RGRRVGAMLL PSSSSSSASK GNSLRKTVID  60
NMRSNLSFDN KQPLFASQDI DYGQPIACIS YPYNDSGSGG VWAAYGSRAS AATVPYLHES  120
RHLHAMKRAR GLGGRFLNTK QLQQQPRNAS TRSTTNGTSS SGSTHLRLGG GTARDQTMLA  180
PKAMPSQDNS KNAVSSAPGF TVIPMLRRDD TFFQQPSHHL SFSGHFGQAS AQAGMHNGTQ  240
HRVPVMR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1846771e-130KF184677.1 Saccharum hybrid cultivar R570 clone BAC 101B12 complete sequence.
GenBankKF1847021e-130KF184702.1 Saccharum hybrid cultivar R570 clone BAC 201D09 complete sequence.
GenBankKF1847261e-130KF184726.1 Saccharum hybrid cultivar R570 clone BAC 117K09 complete sequence.
GenBankKF1847361e-130KF184736.1 Saccharum hybrid cultivar R570 clone BAC 053L01 complete sequence.
GenBankKF1847721e-130KF184772.1 Saccharum hybrid cultivar R570 clone BAC 022O20 complete sequence.
GenBankKF1848161e-130KF184816.1 Saccharum hybrid cultivar R570 clone BAC 239H20 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824571.11e-145nuclear transcription factor Y subunit A-8-like isoform X1
TrEMBLA0A2S3GU661e-144A0A2S3GU66_9POAL; Uncharacterized protein
STRINGPavir.Aa00318.1.p1e-115(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.14e-12nuclear factor Y, subunit A5