PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03550.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 305aa    MW: 33297.4 Da    PI: 11.8687
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03550.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.63.6e-32137193158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVN+KQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R+Rg gGrF
  Pahal.A03550.1 137 NEPIYVNPKQYHGILRRRQLRAKLEAQNKL-VKARKPYLHESRHLHAMKRARGLGGRF 193
                     59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.6E-38135196IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.2136196IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.7E-28138193IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-23139161IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-23170193IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MQSRGPESRP EEGTRGEVAR RRSSFARRTH RGRRVGAMLL PSSSSSSASK GNSLRKTVID  60
NMRSNLSFDN KQPLFASQDI DYGQPIACIS YPYNDSGSGG VWAAYGSRAS AATVFHPQIA  120
GGGTSARIPL PLELAENEPI YVNPKQYHGI LRRRQLRAKL EAQNKLVKAR KPYLHESRHL  180
HAMKRARGLG GRFLNTKQLQ QQPRNASTRS TTNGTSSSGS THLRLGGGTA RDQTMLAPKA  240
MPSQDNSKNA VSSAPGFTVI PMLRRDDTFF QQPSHHLSFS GHFGQASAQA GMHNGTQHRV  300
PVMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20137198263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0174640.0BT017464.1 Zea mays clone EL01N0407G01.c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824571.10.0nuclear transcription factor Y subunit A-8-like isoform X1
TrEMBLA0A2S3GU660.0A0A2S3GU66_9POAL; Uncharacterized protein
STRINGPavir.Aa00318.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.42e-40nuclear factor Y, subunit A8