PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A03438.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GeBP | ||||||||
Protein Properties | Length: 294aa MW: 31898.1 Da PI: 10.3313 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 39.6 | 1.5e-12 | 109 | 176 | 4 | 70 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvk 70 ++ ws+ De +lL + + f++++g p d+ ++++ +++sis ++ + + K++rLK Kf++ Pahal.A03438.1 109 KKYWSDADEFTLLAAAVAFRERNGRAPRLpDMAELFDSISDSISPDIDQFMVYYKMKRLKSKFQHSNG 176 678**********************88877*********************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.7E-11 | 109 | 175 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDADAGPSPP RSKKRPSGKS DSDWSPNPSP RGSPSEHKRR RRTSAESAAL ALTAVAARAS 60 AASSDAGRGA VRRSLRPRRR AARVDGGDGG IQMLGDAAAR VGGGRGGVKK YWSDADEFTL 120 LAAAVAFRER NGRAPRLPDM AELFDSISDS ISPDIDQFMV YYKMKRLKSK FQHSNGPSDR 180 RLRNLCSILW GVGVVPSSED DSDAAERRSV PDAAAMMPVV TEVLGEYWKT NERVMAPVPL 240 EKGLSLLGKK EGRLLETKWR QQLDEEMQSQ MRQHDLAKEV CGLLTDAIKG LGP* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825361.1 | 0.0 | uncharacterized protein LOC112900770 | ||||
Refseq | XP_025825369.1 | 0.0 | uncharacterized protein LOC112900770 | ||||
Refseq | XP_025825375.1 | 0.0 | uncharacterized protein LOC112900770 | ||||
TrEMBL | A0A2T8KXX4 | 0.0 | A0A2T8KXX4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J28432.1.p | 1e-166 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2682 | 27 | 63 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A03438.1 |