PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03356.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 434aa    MW: 47407.5 Da    PI: 7.9435
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03356.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.36.3e-081758338
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    +r C+ + + +++++C  ++ +lC+ C  + H+       H+
  Pahal.A03356.1 17 ARACDSCLRRRARWYCAADDAFLCQGCDASVHSAnplarrHE 58
                    578*****************************6567777776 PP
2CCT67.24.4e-23381424144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Pahal.A03356.1 381 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRP 424
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.3E-111562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.681562IPR000315B-box-type zinc finger
CDDcd000213.79E-91862No hitNo description
PfamPF006431.3E-61859IPR000315B-box-type zinc finger
PROSITE profilePS5101715.993381423IPR010402CCT domain
PfamPF062034.9E-18381423IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSGSKAAPGA AVGGKAARAC DSCLRRRARW YCAADDAFLC QGCDASVHSA NPLARRHERL  60
RLCPTSPPRH AALEAGAVST SASASKKRQQ VTPGWSRRKA RTRRPHVKSV GQLLSGKLIV  120
VPEVTVESSS DERKAEEEEA EEEQLLYRVP NFDRALAELC SPPPIDDPAP GAPCSREDAD  180
GTVEHTKTPV VAESPVQQLP DSFVGFGPTD TELREFAADM EALLGQGLHN GNELDESFYM  240
DSLGLMMPAE DGGRVKMEPG SSVISHIEGS LRRGPAELKP EDSAEVLDID FHCGSPAVID  300
HDEDSFERKA QFLKRSLDLR LNYEAIIESW GSSPWTGGQR PNVQLEDFWP HAHHSGVWMA  360
GGGRLGGEAL TPRLGMMGGG REARVSRYRE KRRTRLFAKK IRYEVRKLNA EKRPRMKGRF  420
VKRPAAAAPC AVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1391407RRTRLFAKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797872.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2S3GT230.0A0A2S3GT23_9POAL; Uncharacterized protein
STRINGSi017124m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-67B-box type zinc finger protein with CCT domain