PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03349.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 271aa    MW: 29596.4 Da    PI: 5.5865
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03349.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lv     +G  +W+++++  g+ R++k+c++rw +yl
   Pahal.A03349.1 14 KGPWTVEEDQKLVAFLLSHGHCCWRLVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding551.9e-1770111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++eE+ l +d+++qlG++ W++Ia+ ++ gRt++++k++w+++
   Pahal.A03349.1  70 LSEEEEALVIDLHAQLGNR-WSKIAAQLP-GRTDNEIKNHWNTH 111
                      599****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-21563IPR009057Homeodomain-like
PROSITE profilePS5129415.401961IPR017930Myb domain
SuperFamilySSF466891.31E-2711108IPR009057Homeodomain-like
SMARTSM007171.4E-121363IPR001005SANT/Myb domain
PfamPF002494.4E-141461IPR001005SANT/Myb domain
CDDcd001679.06E-101661No hitNo description
PROSITE profilePS5129428.23462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2564117IPR009057Homeodomain-like
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002493.1E-1570111IPR001005SANT/Myb domain
CDDcd001671.36E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRQPCCEKV GLKKGPWTVE EDQKLVAFLL SHGHCCWRLV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEEEEALVID LHAQLGNRWS KIAAQLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPVTHRPLS PARPEEVFPL AQQRHDPPHV REGRCDDEPK QALSSRGLPG AEDDEDEEAP  180
ASAQPQGATS PASTAAAVSP SCSSSSTASA SFATPGADVA AWSDPIDLFQ VDSIMDMDWA  240
GILSGCGEDG AGIDVDLFDH YPGFDQQVWM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9646201e-166EU964620.1 Zea mays clone 280394 odorant 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810185.10.0transcription factor MYB20-like
SwissprotQ9C7U74e-82MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A2S3GTB30.0A0A2S3GTB3_9POAL; Uncharacterized protein
STRINGPavir.Aa00435.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.16e-83myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]