PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A03252.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 388aa MW: 43649.5 Da PI: 8.8053 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.3 | 6.2e-53 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ Pahal.A03252.1 17 LPGFRFHPTDEELVRFYLKRKIQQKSLPI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSd 110 69***************************.89***************9888999***************************************96 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg+ktdW+mhe+rl Pahal.A03252.1 111 GSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 143 6677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-58 | 14 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.866 | 16 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-25 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MDEIRSDDME KQDEVILPGF RFHPTDEELV RFYLKRKIQQ KSLPIELIRQ LDIYKYDPWD 60 LPKLASTGEK EWYFYCPRDR KYRNSTRPNR VTGAGFWKAT GTDRPIYSSD GSKCIGLKKS 120 LVFYKGRAAK GVKTDWMMHE FRLPSLTDPS LPPKKPLEKT IHPNDSWAIC RIFKKTNSTA 180 QRALSHSWVL PPLSSTNENY MRPSSQATQR SHHSSENTSS TMTDIVSSTI QFNGSNYTPS 240 ILSSSRNPLS IIGSSRPAAS LVLPPSGAEH HTMSVLSAIP LDLPAGMDIT SMVLNASPTT 300 LQNQDRIPTN IEFGQPHCTN NSIIMANRCT VDLPDIGNSA NSFPRSINFP FNLQGALPDD 360 WRMTLPWDSL PCTTEVSMNN QPTKCYT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-52 | 18 | 178 | 17 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC196472 | 1e-177 | AC196472.3 Zea mays BAC clone ZMMBBb-235B12 from chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794833.1 | 0.0 | putative NAC domain-containing protein 94 isoform X1 | ||||
Swissprot | Q9ZVH0 | 1e-104 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A2S3GSU6 | 0.0 | A0A2S3GSU6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab02998.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13717 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-107 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A03252.1 |
Publications ? help Back to Top | |||
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