PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A03234.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 25181.9 Da PI: 10.2994 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.5e-13 | 168 | 212 | 2 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 r +h++ E+rRR +iN+++e LrellP+ ++K +Ka+ L +A Y Pahal.A03234.1 168 RSKHSATEQRRRTKINDRLEILRELLPHG----DQKRDKASFLLEAKVY 212 899*************************7....79********998665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-12 | 164 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-14 | 165 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.113 | 166 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-10 | 168 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.61E-10 | 168 | 212 | No hit | No description |
SMART | SM00353 | 2.9E-4 | 172 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MQLFQGEKPA HDFLSLHTGG GSSSPVQHSA QGYDLGVHTS LKPLKLGKRR GGGSGGGAVG 60 MAPSGLEADS SEHLLPGGVG TFSIRQAPST AQPRGQPAGQ VVVARGAFAP VLHGSRTEAA 120 HGAESGARAH CGPATTWQDS GTDQRSRATR GEGRSSGSSG DQGPSTPRSK HSATEQRRRT 180 KINDRLEILR ELLPHGDQKR DKASFLLEAK VYYRSCWKNT EDNKCEETIH VTKKLRC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 49 | LKLGKRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243257 | 1e-119 | AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798281.1 | 1e-153 | transcription factor BIM2-like isoform X1 | ||||
TrEMBL | A0A2S3GTA6 | 1e-152 | A0A2S3GTA6_9POAL; Uncharacterized protein | ||||
STRING | Si016505m | 3e-94 | (Setaria italica) | ||||
STRING | GRMZM2G317450_P03 | 4e-97 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.1 | 3e-19 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A03234.1 |