PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03213.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 367aa    MW: 40329 Da    PI: 5.038
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03213.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45.3e-07445540
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     C+ +++++  ++C+++   lC +C  + H+       Ht++
  Pahal.A03213.3  4 LCDFCGKQRSMIYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                    7*****************************657888889876 PP
2zf-B_box17.39.7e-064788540
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     C+++ ++++   C + ++ lC++C  ++H        H+++
  Pahal.A03213.3 47 LCDRCCSQPAAVRCIEENTSLCQNCDWNGHDAasgatgHKRQ 88
                    7*****************************447778888876 PP
3CCT62.71.2e-21309352144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrF k+ 
  Pahal.A03213.3 309 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFIKAG 352
                     899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.196147IPR000315B-box-type zinc finger
CDDcd000215.13E-6447No hitNo description
PROSITE profilePS501198.7744390IPR000315B-box-type zinc finger
CDDcd000213.18E-44790No hitNo description
SMARTSM003360.894890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.368309351IPR010402CCT domain
PfamPF062039.9E-17309351IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAALCDFCGK QRSMIYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CCSQPAAVRC  60
IEENTSLCQN CDWNGHDAAS GATGHKRQAI NCYSGCPSSA ELSRIWSFVM DIPTVAAEPN  120
CEDGMSMMTI DDGDGFNVLP LATNQPAGPV SMTQKVPYAA DDDKFNDGSM YEDLCVDDTD  180
LTFENYEELF GTSHIQTEQL FDDAGIDSYF EMKEMPPFDS NEEHKYMQLE CSNVVSADSA  240
MSNPGAQADS SLCIPVRQVR SSISQSFSGL TGESSAGDHQ DCGVSPMLLM GEAPWHPPGP  300
EGSVAGGSRD SALTRYKEKK KRRKFDKKIR YASRKARADV RKRVKGRFIK AGEAYDYDPL  360
NQTRSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318322KKKRR
2318323KKKRRK
3319323KKRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432570.0AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827948.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9LUA91e-123COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A2S3GT850.0A0A2S3GT85_9POAL; Uncharacterized protein
TrEMBLA0A2T7FBG30.0A0A2T7FBG3_9POAL; Uncharacterized protein
STRINGSi017374m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.12e-99B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]