PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A03213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CO-like | ||||||||
Protein Properties | Length: 408aa MW: 44509.6 Da PI: 4.9848 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.2 | 6.1e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +++++ ++C+++ lC +C + H+ Ht++ Pahal.A03213.1 4 LCDFCGKQRSMIYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45 7*****************************657888889876 PP | |||||||
2 | zf-B_box | 17.2 | 1.1e-05 | 47 | 88 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+++ ++++ C + ++ lC++C ++H H+++ Pahal.A03213.1 47 LCDRCCSQPAAVRCIEENTSLCQNCDWNGHDAasgatgHKRQ 88 7*****************************447778888876 PP | |||||||
3 | CCT | 62.5 | 1.3e-21 | 350 | 393 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrF k+ Pahal.A03213.1 350 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFIKAG 393 899*************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.7E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.196 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.15E-6 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.774 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.61E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.89 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.1E-16 | 350 | 392 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.368 | 350 | 392 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MAALCDFCGK QRSMIYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CCSQPAAVRC 60 IEENTSLCQN CDWNGHDAAS GATGHKRQAI NCYSGCPSSA ELSRIWSFVM DIPTVAAEPN 120 CEDGMSMMTI DDGDVTNHCG ASDDKRLLEI ASTALMSDPP TGDKLKPLIG SSSGDGFNVL 180 PLATNQPAGP VSMTQKVPYA ADDDKFNDGS MYEDLCVDDT DLTFENYEEL FGTSHIQTEQ 240 LFDDAGIDSY FEMKEMPPFD SNEEHKYMQL ECSNVVSADS AMSNPGAQAD SSLCIPVRQV 300 RSSISQSFSG LTGESSAGDH QDCGVSPMLL MGEAPWHPPG PEGSVAGGSR DSALTRYKEK 360 KKRRKFDKKI RYASRKARAD VRKRVKGRFI KAGEAYDYDP LNQTRSY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 359 | 363 | KKKRR |
2 | 359 | 364 | KKKRRK |
3 | 360 | 364 | KKRRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035398 | 0.0 | BT035398.1 Zea mays full-length cDNA clone ZM_BFb0059C10 mRNA, complete cds. | |||
GenBank | EU972243 | 0.0 | EU972243.1 Zea mays clone 378354 zinc finger protein CONSTANS-LIKE 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827948.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 1e-123 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A2S3GT85 | 0.0 | A0A2S3GT85_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7FBG3 | 0.0 | A0A2T7FBG3_9POAL; Uncharacterized protein | ||||
STRING | Si017374m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 3e-98 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A03213.1 |