PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03088.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 350aa    MW: 36417.3 Da    PI: 5.8209
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03088.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09151198455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR+ri +++  L+el+P +    sk   Ka +L + ++Y++sLq
  Pahal.A03088.1 151 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 198
                     8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.04E-10145202No hitNo description
SuperFamilySSF474591.83E-16145212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-16147209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.491147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MARCQGTVGS LCQGLLDLDD DKFGAMCSAF GYLQEWPDLG AMCGASLGAT PGAGDGNDDS  60
SCNGSGGLKK RGPDACLDAK GDGNDMSKRP RGKQQQQLCG LVEVAAPGKG KQERPKAGTK  120
KKAEAASTAA AAGQKTDYIH VRARRGQATD SHSLAERVRR ERISERMRYL QELVPGCSKV  180
TGKAGMLDEI INYVQSLQKQ VEFLSMKIAA SNPVVSFDIV EDLFGRQLKQ ACSPAALPAM  240
ALPAGQLEPT GLQMSPLQQV HPSAAAGSNG FGLDMVVNNL YPSAAASCPV SAATPVMAAG  300
GPSIEPCLNV NGAAAAAWDI GSQNLFGGFD AQFQSVESDC LLDNLKMEM*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813679.10.0transcription factor bHLH49-like
TrEMBLA0A2S3GSU20.0A0A2S3GSU2_9POAL; Uncharacterized protein
STRINGPavir.Aa00761.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.17e-36cryptochrome-interacting basic-helix-loop-helix 1