PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03049.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 475aa    MW: 52946.2 Da    PI: 5.313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03049.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11274320354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +a+ + Er RR+++N ++  Lr+l P++     +K++ a+i+  A+eYI++L
  Pahal.A03049.1 274 KANFATERERREQLNVKYGALRSLFPNP-----TKNDRASIVGDAIEYINEL 320
                     68899***********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.402271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.33E-12273335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8274320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-8277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-10278332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.45E-8280325No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MIAGGGYFDG SHDHILMEGS MIHDSSQCSI YDNTNEEQQS FRLAPFSIED HSNPANLTSE  60
PAMVIDHIQN QLGIDMEQDN SGHMIQEVPT VETANLVPSI YGVHDHILSS QIGEGPHNIT  120
VEQQLLDYDA ASYRSGTYAT AHDLLNSLQT QRSSLTHEFP STEHIFGDPA QNMVNHLNMN  180
NDLPGIAIHE SGMMFSDSTL PLGYHATQSH MLKDLYHSLP QNYGLFTSDD ERDGMIAVPG  240
VSGNIFQEID ESQFDSPILR SRRQKGGFGK GKGKANFATE RERREQLNVK YGALRSLFPN  300
PTKNDRASIV GDAIEYINEL NRTLKELKIL VEKKRNSTDR RKRLKLDDEA ADDGESSSMQ  360
PVSDEQNNPM NGAIRSSWIQ RRSKECDVDV RIVDDEINIK FTEKKRANSL LSAAKVLEEF  420
CLDLIHVVGG IIGDHHIFMF NTKIPKGSSV YACAVAKKLL EAVEMKNQAL KIFN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9627970.0EU962797.1 Zea mays clone 245608 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808871.10.0transcription factor EAT1-like
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLA0A2S3GSC60.0A0A2S3GSC6_9POAL; Uncharacterized protein
STRINGPavir.Ab02794.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.25e-54bHLH family protein