PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 357aa    MW: 37815 Da    PI: 4.2336
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.8e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed +l  +++++G  +W++ ++  g+ R++k+c++rw +yl
   Pahal.A03010.1 16 RGSWTPQEDMRLMAYIQKHGHSNWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP

2Myb_DNA-binding51.13.2e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
   Pahal.A03010.1  69 RGNFTVEEEETIIRLHGMLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0671163IPR017930Myb domain
SuperFamilySSF466893.74E-3013110IPR009057Homeodomain-like
SMARTSM007177.0E-121565IPR001005SANT/Myb domain
PfamPF002497.6E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-231770IPR009057Homeodomain-like
CDDcd001677.86E-101863No hitNo description
PROSITE profilePS5129424.84764118IPR017930Myb domain
SMARTSM007172.1E-1468116IPR001005SANT/Myb domain
PfamPF002491.2E-1469114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2671117IPR009057Homeodomain-like
CDDcd001675.23E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRGRAPCCA KVGLNRGSWT PQEDMRLMAY IQKHGHSNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTVEEEETI IRLHGMLGNK WSKIAACLPG RTDNEIKNVW NTHLKKKAAL  120
REQQKAGAAK NDGAASGGDA GTPVTDSSSA SSSTTTTNSS SGGSDSGDQC DTSKEPDAVP  180
VSPLQLEDVD VSEMLVDAPA AAQPMLSASC SSSSLTTCAG GVEDLIELPV IDIEPDIWSI  240
IDGECADASG ARRGDATAPC TGAAVSTSEA GEAANDWWLE NLEKELGLWG PAEDPQAQTD  300
LLDHTGFGPL VDSEGDPVST YFQTGPDNAA AELLLDVELE LELELEPEPE PSALLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-27141172104C-Myb DNA-Binding Domain
1msf_C9e-27141172104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814304.10.0myb-related protein Zm1-like
SwissprotP200241e-169MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A2S3GS790.0A0A2S3GS79_9POAL; Uncharacterized protein
STRINGPavir.Aa01159.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.18e-70myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]