PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02989.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 356aa    MW: 37808.4 Da    PI: 5.7473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02989.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-1494145155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Pahal.A02989.1  94 QRMTHIAVERNRRRQMNEYLAALRSLMPEP---YVQRGDQASIVGGAIEFVKELE 145
                     79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1785158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-1492149No hitNo description
PROSITE profilePS5088815.50493144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-1294145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-1494158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1199150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSALVDALCA PPGDASALIY DTFNAASFLF DGPAAAALYD GAGIVECPAP AQQQQQAAEA  60
AGETQAATSS APTRVRKRRR RARSCKSREE TETQRMTHIA VERNRRRQMN EYLAALRSLM  120
PEPYVQRGDQ ASIVGGAIEF VKELEHQLQC LEAQKRTLLV HQHKAAKPDA TPMHHSSGST  180
KATAGTTACV ESAAAATTTS NCSSSVTEDA ADHAPPPPFA QFFTYPQYVW CHSPRDPASS  240
SSAEDGGRPG VADIEVSLVE THASLRVMTP RRPGQLLGLV TGLQALRLGV LHLSVTTLES  300
LALYSISVKV EEGCSLATVE DIAAAAHHVL CLIDAAEATE QQQEEEEVLA ASGPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17579RKRRR
27582RKRRRRAR
394105RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668891e-122BT066889.1 Zea mays full-length cDNA clone ZM_BFb0091G16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800848.10.0transcription factor bHLH94-like
SwissprotQ9C7T43e-67BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2S3GS590.0A0A2S3GS59_9POAL; Uncharacterized protein
STRINGPavir.Ab02502.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.15e-32bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]