PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02949.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 457aa    MW: 48450.9 Da    PI: 8.5964
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02949.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-165195147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E+ ++++a +++G   W++I +++g ++t+ q++s+ qk+
   Pahal.A02949.1 51 REKWTEDEHRRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 95
                     789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-154599IPR009057Homeodomain-like
PROSITE profilePS5129419.73246100IPR017930Myb domain
TIGRFAMsTIGR015573.4E-164998IPR006447Myb domain, plants
SMARTSM007171.7E-125098IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-95191IPR009057Homeodomain-like
PfamPF002496.5E-145194IPR001005SANT/Myb domain
CDDcd001678.70E-105396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MACLEEHQMA TDEVAVAVDH RKDPLDSGDM DLSGEEHVPK ARKPYTITKQ REKWTEDEHR  60
RFLEALQLHG RAWRRIQEHI GTKTAVQIRS HAQKFFTKVV RESSGSSTTA GAAPAIQIPP  120
PRPKRKPAHP YPRKVDGAAK KHVPALRQLE KPPLRTHSPR DQDDGSPTSV LTTARTVLRA  180
EELGSVFANS SSGSRTPSQS AAGSDEHGNG GGSPASTINR EDGGVSPSVA TDELATRTAN  240
AKVFGDAKEA GTEAPVFKLF GKKVVVKDSY GHPESGRDLK IGASPAIVAA GGSSWNPWPG  300
AVQQLMCFVP QPDGFAAQSV VPWLAYNGSL PCALFYPQAA PSAQQLHQTS EPPDHKRTQR  360
EGSRTGSNTA SSAVPAAQNS DATESHGPGQ ETTSESGAVP PAAAAVPVPR LARCASSASF  420
SRRGFVPHKR CAAESEAPRP VAAGEEADGE LTRLCL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814514.10.0protein REVEILLE 1-like
TrEMBLA0A2S3GS630.0A0A2S3GS63_9POAL; Uncharacterized protein
STRINGPavir.Aa00960.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.38e-35MYB_related family protein