PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A02905.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 24670.3 Da PI: 5.3345 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.7e-18 | 62 | 112 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ grWv+e+r+p g ++r++lg+f tae+Aa+a++ a+++l+g Pahal.A02905.1 62 PVYKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 112 68*****887.9******9996..33.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.0E-14 | 62 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.089 | 63 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-28 | 63 | 126 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-21 | 63 | 121 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 63 | 122 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.70E-21 | 64 | 122 | No hit | No description |
PRINTS | PR00367 | 2.8E-8 | 64 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-8 | 86 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDAGAFVSSD YYSSSGTPSP VGGGGGGADG DDDGSSSSYM TVSSAPPKRR AGRTKFKETR 60 HPVYKGVRRR NPGRWVCEVR EPHGKQRIWL GTFETAEMAA RAHDVAALAL RGRAACLNFA 120 DSPRLLRVPP MGAGHDEIRR AAAVAAEQFR PTPGQGNAAA VEVAAAPPVA LPSAPQNFDD 180 PYCIVDDRLD FGMQGYLDMA QGMLIDPPPM AGSSASGGDD DDNDNGEVRL WSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 61 | 119 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727873 | 0.0 | KJ727873.1 Zea mays clone pUT5966 AP2-EREBP transcription factor (EREB16) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806310.1 | 1e-169 | dehydration-responsive element-binding protein 1G-like | ||||
Swissprot | A2XWL6 | 1e-100 | DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q8H273 | 1e-100 | DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | A0A2S3GRZ6 | 1e-168 | A0A2S3GRZ6_9POAL; Uncharacterized protein | ||||
STRING | Si018262m | 1e-126 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 4e-35 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A02905.1 |
Publications ? help Back to Top | |||
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