PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A02894.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 352aa MW: 36489.6 Da PI: 8.7318

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A02894.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2.1e-39	59	120	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Pahal.A02894.1 59 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 120 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	55	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	61	117	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	63	117	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MEEETREGGS NSIRAIHRAF LLIPRPSHPN EESLARSAIG ILACMDAAQW HQRRARPQKE 60 KALNCPRCNS TNTKFCYYNN YSLQQPRYFC KTCRRYWTEG GSLRNVPVGG GSRKNKRSSS 120 AVSSAAAAAA STSAAVSGTI PVGLAAKNPK LMHEGAHDLN LAFPHHNGRG LQPPDFAAFP 180 SLESSSVCNP GATMAGNGAA GRGVGALSAM ELLRSTGCYV PLQHVQLGMP AEYAAAGFAL 240 GDFRMPPPPQ SHQSVLGFSL DTHGTGAGGY SAGLQESAAG RLLFPFEDLK PAVSAAAGAA 300 HNNGAGQYEH SKDQAGDGSG ASGVTGGHET PGFWSNSILG NGSSNGGGGP W*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MEEETREGGS NSIRAIHRAF LLIPRPSHPN EESLARSAIG ILACMDAAQW HQRRARPQKE  60
KALNCPRCNS TNTKFCYYNN YSLQQPRYFC KTCRRYWTEG GSLRNVPVGG GSRKNKRSSS  120
AVSSAAAAAA STSAAVSGTI PVGLAAKNPK LMHEGAHDLN LAFPHHNGRG LQPPDFAAFP  180
SLESSSVCNP GATMAGNGAA GRGVGALSAM ELLRSTGCYV PLQHVQLGMP AEYAAAGFAL  240
GDFRMPPPPQ SHQSVLGFSL DTHGTGAGGY SAGLQESAAG RLLFPFEDLK PAVSAAAGAA  300
HNNGAGQYEH SKDQAGDGSG ASGVTGGHET PGFWSNSILG NGSSNGGGGP W*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582410	0.0	KC582410.1 Sorghum bicolor dof16 protein (dof16) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826521.1	0.0	dof zinc finger protein 2-like isoform X2
Swissprot	B9F1L8	1e-121	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A2T7FAC1	0.0	A0A2T7FAC1_9POAL; Uncharacterized protein
STRING	Si017619m	1e-161	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-38	Dof family protein

Link Out ? help Back to Top
Phytozome	Pahal.A02894.1

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]