PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02884.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 583aa    MW: 60425.7 Da    PI: 8.753
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02884.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0592114123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k F r  nL+ H r H
  Pahal.A02884.3  92 FVCEVCNKGFQREQNLQLHRRGH 114
                     89*******************88 PP
2zf-C2H211.70.00082169191123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +++
  Pahal.A02884.3 169 WKCDKCSKRYAVQSDWKAHSKVC 191
                     58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-791114No hitNo description
Gene3DG3DSA:3.30.160.608.0E-691114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.8E-592114IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09492114IPR007087Zinc finger, C2H2
SMARTSM003550.004192114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SMARTSM00355290134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-4157189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.59E-7164189No hitNo description
SMARTSM00355140169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDGD HQEQIKPPLL AQPHQQLPPA PLLSAAASSS AAGSAQAAAA  60
ASPPVKKKRT LPDPDAEVIA LSPKTLLATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL  120
KQKDPLQAQR RRVYLCPEPT CAHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV  180
QSDWKAHSKV CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARLPPP GLTASHLYGA  240
SSAANMALSL SQVGSHLAST LGGDAHGHHH QDLLRLGGAV NRFDHLLGPS SASAFRPLPP  300
PPPSAFLMGA PQEFGDGDGT GSHAFLSQGK PFQGLMHLPD LQGNGAGGPS ASSAPGLFNL  360
GYIANSANSS GTSSHGHASQ GHLTSDQFSE GGGGGGGGGS ETSAAMLFSG GGSFAGGDHQ  420
VAPGGMYNDQ AVMLPQMSAT ALLQKASQMR SSSSAHGGAA VFGGLVGSSA PSAAHGRAPM  480
LDQSQMHLQS LMNSLAAGGM FGGANSGSMI DPRMYDMDQD VKFSQGRGGA EMTRDFLGVG  540
GGGVMRGMPV ARGDHHDGAG DMSSLEAEMK SASSSFTGGR MQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34165227365Zinc finger protein JACKDAW
5b3h_F1e-34165227365Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542580.0BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807955.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_025807961.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_025807969.10.0protein indeterminate-domain 4, chloroplastic-like
TrEMBLA0A2S3GS020.0A0A2S3GS02_9POAL; Uncharacterized protein
STRINGSb04g032140.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-103indeterminate(ID)-domain 12