PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A02884.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 583aa MW: 60425.7 Da PI: 8.753 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Pahal.A02884.1 92 FVCEVCNKGFQREQNLQLHRRGH 114 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00082 | 169 | 191 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +++ Pahal.A02884.1 169 WKCDKCSKRYAVQSDWKAHSKVC 191 58*****************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.59E-7 | 91 | 114 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.0E-6 | 91 | 114 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 3.8E-5 | 92 | 114 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 11.094 | 92 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0041 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 290 | 134 | 164 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.6E-4 | 157 | 189 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.59E-7 | 164 | 189 | No hit | No description |
SMART | SM00355 | 140 | 169 | 189 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MASNSSAAAV AALFGIRDGD HQEQIKPPLL AQPHQQLPPA PLLSAAASSS AAGSAQAAAA 60 ASPPVKKKRT LPDPDAEVIA LSPKTLLATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL 120 KQKDPLQAQR RRVYLCPEPT CAHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV 180 QSDWKAHSKV CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARLPPP GLTASHLYGA 240 SSAANMALSL SQVGSHLAST LGGDAHGHHH QDLLRLGGAV NRFDHLLGPS SASAFRPLPP 300 PPPSAFLMGA PQEFGDGDGT GSHAFLSQGK PFQGLMHLPD LQGNGAGGPS ASSAPGLFNL 360 GYIANSANSS GTSSHGHASQ GHLTSDQFSE GGGGGGGGGS ETSAAMLFSG GGSFAGGDHQ 420 VAPGGMYNDQ AVMLPQMSAT ALLQKASQMR SSSSAHGGAA VFGGLVGSSA PSAAHGRAPM 480 LDQSQMHLQS LMNSLAAGGM FGGANSGSMI DPRMYDMDQD VKFSQGRGGA EMTRDFLGVG 540 GGGVMRGMPV ARGDHHDGAG DMSSLEAEMK SASSSFTGGR MQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 165 | 227 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 165 | 227 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054258 | 0.0 | BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807955.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_025807961.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_025807969.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like | ||||
TrEMBL | A0A2S3GS02 | 0.0 | A0A2S3GS02_9POAL; Uncharacterized protein | ||||
STRING | Sb04g032140.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1733 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 1e-103 | indeterminate(ID)-domain 12 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A02884.1 |