PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A02882.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 413aa MW: 43973.6 Da PI: 7.4975 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.4 | 0.0006 | 363 | 396 | 16 | 54 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 i +++ L++++ + +K + a++L ++++YIk L Pahal.A02882.2 363 IGEKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 396 667889999999987.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.074 | 347 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.33E-4 | 362 | 401 | No hit | No description |
SuperFamily | SSF47459 | 4.71E-8 | 362 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-8 | 362 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MHLHAAGAVH LQYFMPRHQP QEAATDLQAQ GSSSAVCRRS SSSSTSPAAT MWEYHQAAHA 60 AALQTASPSA SSFPSWSSSY AGTTAALLGS GSAFATDASS PPDLRLPAST EHGHVHAWSQ 120 HGEQSNSTCY RENFLDLLAS KNVTQEMFED VPAGHYTAQA LSGRLGAGSD VAPIKYETTG 180 GSPLLFGGTT GMHQGMNMAA CTPCYPYADH HHQMKEGGNQ QQELAAPAMA SFLQQLSSNA 240 SAGMHAGLDY SGIGLDKICQ EGRAMEASSF GMRSLPDLSS FSGYRSNAES TSSVQPYLRS 300 SNLPDSSKQE QDIVSARSSS SGSGAASDRK KRPSEERTST VKKSKQEGSK PSPPKQQVPK 360 VKIGEKITAL QQIVSPFGKT DTASVLFETI KYIKFLHEQV QKSKRNFTTD EQ* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042937 | 1e-128 | BT042937.1 Zea mays full-length cDNA clone ZM_BFc0067L11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827067.1 | 0.0 | uncharacterized protein LOC112902284 | ||||
TrEMBL | A0A2S3GRZ5 | 0.0 | A0A2S3GRZ5_9POAL; Uncharacterized protein | ||||
STRING | Si017063m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 3e-14 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A02882.2 |