PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A02882.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 475aa MW: 50934.4 Da PI: 7.0419

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A02882.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.2	0.00072	363	396	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 i +++ L++++ + +K + a++L ++++YIk L Pahal.A02882.1 363 IGEKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 396 667889999999887.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.074	347	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.85E-4	362	401	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.0E-7	362	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.11E-8	362	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MHLHAAGAVH LQYFMPRHQP QEAATDLQAQ GSSSAVCRRS SSSSTSPAAT MWEYHQAAHA 60 AALQTASPSA SSFPSWSSSY AGTTAALLGS GSAFATDASS PPDLRLPAST EHGHVHAWSQ 120 HGEQSNSTCY RENFLDLLAS KNVTQEMFED VPAGHYTAQA LSGRLGAGSD VAPIKYETTG 180 GSPLLFGGTT GMHQGMNMAA CTPCYPYADH HHQMKEGGNQ QQELAAPAMA SFLQQLSSNA 240 SAGMHAGLDY SGIGLDKICQ EGRAMEASSF GMRSLPDLSS FSGYRSNAES TSSVQPYLRS 300 SNLPDSSKQE QDIVSARSSS SGSGAASDRK KRPSEERTST VKKSKQEGSK PSPPKQQVPK 360 VKIGEKITAL QQIVSPFGKT DTASVLFETI KYIKFLHEQV QLLSEPYTNS GRNKGNLPWA 420 VEHAETSKGD QAQAEHDLRD RGLCLVPVSW TPEVYRDGTA MDYWTPAYRG CLYR*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MHLHAAGAVH LQYFMPRHQP QEAATDLQAQ GSSSAVCRRS SSSSTSPAAT MWEYHQAAHA  60
AALQTASPSA SSFPSWSSSY AGTTAALLGS GSAFATDASS PPDLRLPAST EHGHVHAWSQ  120
HGEQSNSTCY RENFLDLLAS KNVTQEMFED VPAGHYTAQA LSGRLGAGSD VAPIKYETTG  180
GSPLLFGGTT GMHQGMNMAA CTPCYPYADH HHQMKEGGNQ QQELAAPAMA SFLQQLSSNA  240
SAGMHAGLDY SGIGLDKICQ EGRAMEASSF GMRSLPDLSS FSGYRSNAES TSSVQPYLRS  300
SNLPDSSKQE QDIVSARSSS SGSGAASDRK KRPSEERTST VKKSKQEGSK PSPPKQQVPK  360
VKIGEKITAL QQIVSPFGKT DTASVLFETI KYIKFLHEQV QLLSEPYTNS GRNKGNLPWA  420
VEHAETSKGD QAQAEHDLRD RGLCLVPVSW TPEVYRDGTA MDYWTPAYRG CLYR*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042937	1e-166	BT042937.1 Zea mays full-length cDNA clone ZM_BFc0067L11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827067.1	0.0	uncharacterized protein LOC112902284
TrEMBL	A0A2S3GS93	0.0	A0A2S3GS93_9POAL; Uncharacterized protein
STRING	Si017063m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12698	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	2e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.A02882.1