PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02746.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 435aa    MW: 45150.1 Da    PI: 8.3703
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02746.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA602.9e-19352386135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Pahal.A02746.1 352 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 386
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-17346400IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.136346382IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-14349409No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15350384IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.27E-15351408No hitNo description
PROSITE patternPS003440352377IPR000679Zinc finger, GATA-type
PfamPF003203.1E-17352386IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MTHQTTLISS APAAFSPASH SLHASPPLLF TRSYSSSPSC SPSSAAPAAP AMASFVAHHH  60
GSLGEREGRM AALRSSLRPC EAAEELDAAP AAWGAAERGA GLFGEGFSVE DLLDLGDLCE  120
VDRDCAELGE ATPAPAAVED DKLSSDSHGS SVVSYELMPL PPPVIDLPLP AHDAEELEWV  180
SRIMDDSLAE LPPLPKLPAA PVAVARRPLE RAVPAAAAAA ATDPMRSPTI CALSTEALVP  240
VKARRSKRSR ASVWSLSGGA PLSDSTSSSS TATTSSCSSS GSFSPFLFLP ADSPTAFWAA  300
HLLGEAPRGA SKKSKHGKNG GKPKKRGRKP KHHPPQLTAA AAPAAAAGDR RCSHCGVQKT  360
PQWRAGPEGA KTLCNACGVR YKSGRLLPEY RPACSPTFES SIHSNSHRKV LEMRRKKEGV  420
LVSGPAPLPA VASF*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9671841e-137EU967184.1 Zea mays clone 300086 GATA zinc finger family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798828.10.0GATA transcription factor 6-like
TrEMBLA0A2S3GRU70.0A0A2S3GRU7_9POAL; Uncharacterized protein
STRINGPavir.Ab02582.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA transcription factor 5