PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02734.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 345aa    MW: 38938.6 Da    PI: 6.5721
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02734.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.73.8e-5671361129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv++yL+kkv+++k++l +vik+vd+yk+ePwdL++  k+   e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
  Pahal.A02734.1   7 VPPGFRFHPTDEELVDYYLRKKVASNKIDL-DVIKDVDLYKIEPWDLQEkcKIGMeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPI 100
                     69****************************.9***************952433333556************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     ++ k+ lvg++ktLvfy+grap+g+k+dW+mheyrle
  Pahal.A02734.1 101 YT-KNCLVGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 136
                     **.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-625156IPR003441NAC domain
PROSITE profilePS5100560.1617156IPR003441NAC domain
PfamPF023651.1E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDTFSHVPPG FRFHPTDEEL VDYYLRKKVA SNKIDLDVIK DVDLYKIEPW DLQEKCKIGM  60
EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YTKNCLVGMR KTLVFYRGRA  120
PNGQKSDWIM HEYRLETTEN GTTPEEGWVV CRVFKKRVAT VRRMADGAPC WFDDHVAGFM  180
PNLGSSPRQL MMHHHPPSAS AAAGYGGQQL YHHCKPELEY HHLLPSQEAA FLQQLPQLES  240
PKPPAYIAQG SCSLQSDEPS RYTAQQPAMD PAYMAAGDDS VTDWRVLDKF FASQLFSHGD  300
GTPKEAGYSN PAQVFQAENK QPEEALADYA STSGNGGGEA DLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-51715717166NO APICAL MERISTEM PROTEIN
1ut4_B5e-51715717166NO APICAL MERISTEM PROTEIN
1ut7_A5e-51715717166NO APICAL MERISTEM PROTEIN
1ut7_B5e-51715717166NO APICAL MERISTEM PROTEIN
3swm_A6e-51715720169NAC domain-containing protein 19
3swm_B6e-51715720169NAC domain-containing protein 19
3swm_C6e-51715720169NAC domain-containing protein 19
3swm_D6e-51715720169NAC domain-containing protein 19
3swp_A6e-51715720169NAC domain-containing protein 19
3swp_B6e-51715720169NAC domain-containing protein 19
3swp_C6e-51715720169NAC domain-containing protein 19
3swp_D6e-51715720169NAC domain-containing protein 19
4dul_A5e-51715717166NAC domain-containing protein 19
4dul_B5e-51715717166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750920.0KT075092.1 Panicum virgatum secondary wall NAC master switch (SWN8A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825485.10.0NAC domain-containing protein 7-like
SwissprotQ9FWX21e-124NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A2S3GRT70.0A0A2S3GRT7_9POAL; Uncharacterized protein
STRINGPavir.J39804.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-106NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]