PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02723.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 301aa    MW: 31849.4 Da    PI: 5.9878
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02723.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding507e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l d++ ++G g+W++ +++ g++R +k+c++rw +yl
   Pahal.A02723.1 15 KGLWSPEEDQKLRDYIVRHGHGCWSALPAKAGLHRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding52.21.4e-1669113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g +++eE+e    +++ lG++ W++Iar ++ gRt++++k++w++yl
   Pahal.A02723.1  69 GMFSPEEEETVMSLHATLGNK-WSRIARQLP-GRTDNEVKNYWNSYL 113
                      569******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0781062IPR017930Myb domain
SuperFamilySSF466896.6E-2912109IPR009057Homeodomain-like
SMARTSM007171.1E-121464IPR001005SANT/Myb domain
PfamPF002498.2E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-211669IPR009057Homeodomain-like
CDDcd001677.53E-111862No hitNo description
PROSITE profilePS5129424.5363117IPR017930Myb domain
SMARTSM007172.5E-1367115IPR001005SANT/Myb domain
PfamPF002494.2E-1569113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2570116IPR009057Homeodomain-like
CDDcd001671.68E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGCKVCDKPK PNYRKGLWSP EEDQKLRDYI VRHGHGCWSA LPAKAGLHRN GKSCRLRWIN  60
YLRPGLKHGM FSPEEEETVM SLHATLGNKW SRIARQLPGR TDNEVKNYWN SYLKKRVEGK  120
EGPSTPAPAG TSSGADSEDS QSAKPGDGAA ATDRPADSGG SSEPRESSSA DSSCLTGPPA  180
VACRPHAAPV APKVMFADWL DMVDMDCLGG GPAAAAPGLD AAAGVVGASA STGDRDQHHQ  240
VMSQGSVQVD GPSGVDVSLH GFGDSGASCW EFQEHFDGID QMSTTGFCDL LAMSEFFGLN  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25111183109B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387441e-179BT038744.1 Zea mays full-length cDNA clone ZM_BFb0323B03 mRNA, complete cds.
GenBankHF6794121e-179HF679412.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB6 protein.
GenBankHQ8587141e-179HQ858714.1 Zea mays clone UT1170 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828702.10.0transcription factor LAF1-like
TrEMBLA0A2S3GRF80.0A0A2S3GRF8_9POAL; Uncharacterized protein
STRINGSi017947m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-55myb domain protein 19