PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.A02671.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 219aa MW: 22345.2 Da PI: 10.5216 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.1 | 3.8e-35 | 55 | 178 | 9 | 89 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg............ 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++ssss+++++++ Pahal.A02671.1 55 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssAPSTSSSSSHHHQQTvlgkrpreegda 149 89*******************************************************99999444332333333333333333566666666666 PP TCP 89 ............................k 89 + Pahal.A02671.1 150 aaaasafwaalpapprtteawgfspleaQ 178 66554444444444444444444333330 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-31 | 54 | 137 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.009 | 54 | 108 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MATTRDVSTA AAMFNVYQPL PALSTAAPAA AADGGGGAMA AVPAKPVKKE GGGGKDRHSK 60 VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLLRQ AEPSILAATG SGTTPAVFVS 120 SSAPSTSSSS SHHHQQTVLG KRPREEGDAA AAASAFWAAL PAPPRTTEAW GFSPLEAQAA 180 AAAAAAAAYV PMAQAHHHHL NLLAALSGAA RRAEEETR* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00655 | PBM | Transfer from LOC_Os02g42380 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727699 | 0.0 | KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792458.1 | 1e-154 | transcription factor TCP21-like | ||||
Swissprot | Q9FMX2 | 1e-42 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A2S3GRA0 | 1e-153 | A0A2S3GRA0_9POAL; Uncharacterized protein | ||||
STRING | Sb04g026970.1 | 9e-94 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23280.1 | 5e-33 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.A02671.1 |