PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.A02594.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 281aa MW: 30468.8 Da PI: 6.1667 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.3 | 1.1e-51 | 10 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF P+deelv++yL kkv+++++ ++ evd++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nrat++gyWkatgkd+ev s Pahal.A02594.1 10 LPPGFRFYPSDEELVCHYLLKKVANERIAQ-GTLVEVDLHAREPWELPEVAKLTASEWYFFSFRDRKYATGSRTNRATRTGYWKATGKDREVRS- 102 79*************************998.88***************87778889**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++vg++ktLvfy+grap+g+k+ Wvmhe+rl Pahal.A02594.1 103 GGAVVGMRKTLVFYRGRAPNGVKSGWVMHEFRL 135 9******************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-62 | 7 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.666 | 10 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-28 | 11 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MALREIESTL PPGFRFYPSD EELVCHYLLK KVANERIAQG TLVEVDLHAR EPWELPEVAK 60 LTASEWYFFS FRDRKYATGS RTNRATRTGY WKATGKDREV RSGGAVVGMR KTLVFYRGRA 120 PNGVKSGWVM HEFRLDTPHS PPREDWVLCR VFQKTKGDGA DGQDGDSASS PTAFAGSSRV 180 EPPPEPDHSA SSGVGCYGYA PFPSQQEVPV QPQYYYYGGG GGAAAADHHY GFPRDDAAGA 240 LPGFGPGGDG YGFGAYFDMG GGFGDLASLG GGVEFPQVWN * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-51 | 5 | 154 | 10 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT038122 | 0.0 | BT038122.1 Zea mays full-length cDNA clone ZM_BFb0212P24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822293.1 | 0.0 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 7e-62 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A2S3GRG4 | 0.0 | A0A2S3GRG4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab02337.1.p | 1e-153 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-74 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.A02594.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|