PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A02594.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 281aa MW: 30468.8 Da PI: 6.1667

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A02594.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.3	1.1e-51	10	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF P+deelv++yL kkv+++++ ++ evd++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nrat++gyWkatgkd+ev s Pahal.A02594.1 10 LPPGFRFYPSDEELVCHYLLKKVANERIAQ-GTLVEVDLHAREPWELPEVAKLTASEWYFFSFRDRKYATGSRTNRATRTGYWKATGKDREVRS- 102 79***********************998.88***********87778889**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++vg++ktLvfy+grap+g+k+ Wvmhe+rl Pahal.A02594.1 103 GGAVVGMRKTLVFYRGRAPNGVKSGWVMHEFRL 135 9****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-62	7	154	IPR003441	NAC domain
PROSITE profile	PS51005	58.666	10	154	IPR003441	NAC domain
Pfam	PF02365	4.6E-28	11	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MALREIESTL PPGFRFYPSD EELVCHYLLK KVANERIAQG TLVEVDLHAR EPWELPEVAK 60 LTASEWYFFS FRDRKYATGS RTNRATRTGY WKATGKDREV RSGGAVVGMR KTLVFYRGRA 120 PNGVKSGWVM HEFRLDTPHS PPREDWVLCR VFQKTKGDGA DGQDGDSASS PTAFAGSSRV 180 EPPPEPDHSA SSGVGCYGYA PFPSQQEVPV QPQYYYYGGG GGAAAADHHY GFPRDDAAGA 240 LPGFGPGGDG YGFGAYFDMG GGFGDLASLG GGVEFPQVWN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-51	5	154	10	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038122	0.0	BT038122.1 Zea mays full-length cDNA clone ZM_BFb0212P24 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822293.1	0.0	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	7e-62	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2S3GRG4	0.0	A0A2S3GRG4_9POAL; Uncharacterized protein
STRING	Pavir.Ab02337.1.p	1e-153	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-74	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	Pahal.A02594.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]