PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A02565.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 32832.5 Da PI: 5.4306 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2.1e-17 | 16 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.............TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.............kgRtlkqcksrwqkyl 48 +g+WT++Ed+llv++v+q+G g+W+++a+ g ++R++k+c++rw +yl Pahal.A02565.1 16 KGPWTAQEDKLLVEYVRQHGEGRWNSVAKLTGtdqtlvadplsfgLKRSGKSCRLRWVNYL 76 79*********************************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.6e-16 | 82 | 126 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++++++++G++ W+tIar ++ gRt++++k++w+++ Pahal.A02565.1 82 RGKITPQEESVILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 126 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.364 | 11 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.16E-28 | 14 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-15 | 15 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-17 | 16 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-23 | 17 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.35E-11 | 18 | 76 | No hit | No description |
PROSITE profile | PS51294 | 24.933 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-15 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-14 | 82 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-24 | 84 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.59E-10 | 86 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MEGQFGWGRE EGGWRKGPWT AQEDKLLVEY VRQHGEGRWN SVAKLTGTDQ TLVADPLSFG 60 LKRSGKSCRL RWVNYLRPDL KRGKITPQEE SVILELHALW GNRWSTIARS LPGRTDNEIK 120 NYWRTHFKKG KPSKNIERAR ARFLKQRREM QSQLLLQQQQ GQDQQQRQRQ AGDDHDDGAV 180 TREASSSPAV SLAAQHEEDL QMLQQDMDDL LFQFCCPMAS SSCLLPGAAA AASASASEEG 240 STGDHPQLDE GATWGWGTLW NLDDVADDVD GGACGGWDTS LFPLLQDQGL AFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 16 | 129 | 7 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK099283 | 1e-97 | AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence. | |||
GenBank | AK111807 | 1e-97 | AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824016.1 | 1e-170 | transcription factor MYB2-like | ||||
Swissprot | Q9C9G7 | 3e-47 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A2T7F941 | 0.0 | A0A2T7F941_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa01294.1.p | 1e-157 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 8e-62 | myb domain protein 79 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A02565.1 |
Publications ? help Back to Top | |||
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