PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02530.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 684aa    MW: 71992.5 Da    PI: 6.2946
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02530.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.73.4e-14280339155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Pahal.A02530.1 280 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 339
                     57*******************666664477446**********99*************98 PP
2AP249.88.7e-16382433155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Pahal.A02530.1 382 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 433
                     89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-16280349IPR016177DNA-binding domain
CDDcd000183.21E-20280349No hitNo description
PfamPF008472.9E-11280339IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-15281348IPR001471AP2/ERF domain
PROSITE profilePS5103218.861281347IPR001471AP2/ERF domain
SMARTSM003801.0E-28281353IPR001471AP2/ERF domain
PRINTSPR003673.6E-6282293IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-18382443IPR016177DNA-binding domain
CDDcd000189.91E-24382443No hitNo description
PfamPF008473.1E-10382433IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18383442IPR001471AP2/ERF domain
PROSITE profilePS5103219.467383441IPR001471AP2/ERF domain
SMARTSM003808.1E-34383447IPR001471AP2/ERF domain
PRINTSPR003673.6E-6423443IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MASANNWLGF SLSGQDNPQP NQDSSPAAGI DISGASDFYG LPTQQGSDGH LGVPGLRDDH  60
ASYGIMEAFN RGQQETQDWN MRGLDYNGGA SELSMLVGSS GGAGGGTGKR AVEDSEPKLE  120
DFLGGNSFVS EQDQSGGYLF SGVPMASSTN SNSGSNTMEL SMIKTWLRNN QVPQPQPPAT  180
HQPQPEEMST DASASSFGCS DSLGRNGAVA GGSSQSLALS MSTGSHLPMV VAGGGNASGA  240
AASDSTSSEN KRASGAMDSP SSAIEAVPRK SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD  300
NSCRREGQSR KGRQVYLGGY DKEDKAARAY DLAALKYWGT TTTTNFPISN YEKELEEMKH  360
MTRQEYIAYL RRNSSGFSRG ASKYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTEEEA  420
AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI LESSTLPVGG AARRLKDAVD HVEAAGATIW  480
RADMEGAGVI SQLADAGMGA YASYGHHGWP TIAFQQPSPL TVHYPYGQAP SRGWCKPEQD  540
AAVAAAAHSL QDLQQLHLGS AAHNFFQASS SSTVYNGGGG ASAAGYHQGL GGGGGSFIMP  600
SSTVVADQGH SSTANQGSTC SYGDDQEGKL IGYDAMVATA AGGDPYAAAR SGYQFSQGSG  660
STVSIARANG YSNNWSSPFN GMG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00368DAPTransfer from AT3G20840Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557320.0EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824559.10.0AP2-like ethylene-responsive transcription factor BBM1 isoform X2
SwissprotQ8LSN21e-136BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2S3GQY00.0A0A2S3GQY0_9POAL; Uncharacterized protein
STRINGPavir.J07914.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-125AP2 family protein