PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02488.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 334aa    MW: 34923.9 Da    PI: 4.9265
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02488.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.1e-072259438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                    r C+ +  ++++l+C+ ++ +lC+ C    H g    H 
  Pahal.A02488.1 22 RPCDACAAEPARLHCRADGAFLCPGCDARAH-GagsrHA 59
                    68**************************999.4466675 PP
2zf-B_box22.91.7e-0761105341
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                      + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  Pahal.A02488.1  61 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 105
                     679*****************************6688888898877 PP
3CCT70.35e-24252294143
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                     Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k+
  Pahal.A02488.1 252 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKR 294
                     9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.0E-51963IPR000315B-box-type zinc finger
PROSITE profilePS501199.7691963IPR000315B-box-type zinc finger
PfamPF006438.2E-62259IPR000315B-box-type zinc finger
CDDcd000218.94E-72263No hitNo description
PROSITE profilePS5011910.42459106IPR000315B-box-type zinc finger
PfamPF006437.9E-661106IPR000315B-box-type zinc finger
SMARTSM003364.6E-964106IPR000315B-box-type zinc finger
PROSITE profilePS5101716.916252294IPR010402CCT domain
PfamPF062033.0E-18252294IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDAAAELEQK PAVGYWAVAG ARPCDACAAE PARLHCRADG AFLCPGCDAR AHGAGSRHAR  60
VWLCEVCEHA PAAVTCRADA AALCAACDAD IHSANPLARR HERLPVAPFF GALADAPQPF  120
PSPAFAAAGA QSQGDAAADD DGSNEAEAAS WLLPEPDNSH EDSAAATDAF FADSDAYLGV  180
DLDFARSMDG IKAIGVPVAP PELDIASSGF YYPEHCMNHS VSSSEVAVVP DALAGGVPAA  240
PAAPVASRGK EREARLMRYR EKRKNRRFDK TIRYASRKAY AETRPRIKGR FAKRCSAEAE  300
GEDDALLEHE EGACFSPAVS APAASDGVVP SFC*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811633.10.0zinc finger protein CONSTANS-LIKE 3-like
TrEMBLA0A2S3GR840.0A0A2S3GR84_9POAL; Uncharacterized protein
STRINGSb04g025660.11e-174(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-19CONSTANS-like 3