PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02432.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 315aa    MW: 32431.9 Da    PI: 8.9208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02432.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12250295655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  Pahal.A02432.1 250 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 295
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.723244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-15247308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.81E-13248299No hitNo description
Gene3DG3DSA:4.10.280.101.1E-14249307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-10250295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-13250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MRRFLPVGGG GGEPSPSSST GGRGELAGER GAAAGLRYGG GDISLGHGHG GGGGGHRHHH  60
QLGGGGDAAE RQQDGSMDML ARHSSSPAGF FSNLVVDNGY PSSKAGGSGG GAEAHHPSTA  120
SGSGGRKMKP SQLNFTRPPQ QDGGAAGGHL SQISEDGAFP AGLVGADRGG ASSGGGAARS  180
FSGGFSIVGP WEESRDVIAT LGAYDSQYSG AMAGTALEMA AGMDRYMQLQ QDQVPFKVRA  240
KRGCATHPRS IAERERRTRI SEKLRKLQEL VPNMDKQTST ADMLDLAVEH IKGLQSELQA  300
LKHEQEKCTC CRKR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547251e-110EU954725.1 Zea mays clone 1479278 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808991.10.0transcription factor bHLH128-like
TrEMBLA0A2S3GQQ40.0A0A2S3GQQ4_9POAL; Uncharacterized protein
STRINGPavir.Aa01423.1.p1e-162(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-45bHLH family protein