PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02372.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 401aa    MW: 44751 Da    PI: 5.0248
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02372.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.85.6e-29572011128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                     lp+G++F+P+d el+ e+L++k+          +  +e+i+++d    i++++P++Lp  +k++ ++ +fF++ +k+y+ gkrk+r         
  Pahal.A02372.1  57 LPAGVKFDPSDLELL-EHLEEKIGLGGskphvlI--DEFIPTIDndegICYSHPENLP-GMKTDGSNAHFFHRLSKSYNCGKRKRRRviscsdnt 147
                     799************.99****876654566442..333444433445**********.7788899*******************9668999988 PP

             NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                        ++ +W++tg++k++++ +g ++g k+++v+yk   r  k+ +++Wvmh+y+l
  Pahal.A02372.1 148 vtDDHVRWHKTGRSKPIYD-NGVKKGWKEIMVLYKSsqRGGKPDRAHWVMHQYHL 201
                     7434889************.999***********7611555666*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-3541220IPR003441NAC domain
PROSITE profilePS5100528.72557220IPR003441NAC domain
PfamPF023652.5E-1158201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MARSWLITGR GIAKKIRYTA PSANHKISEF IAEARRECPN CSHVIDNSDV TMLWPGLPAG  60
VKFDPSDLEL LEHLEEKIGL GGSKPHVLID EFIPTIDNDE GICYSHPENL PGMKTDGSNA  120
HFFHRLSKSY NCGKRKRRRV ISCSDNTVTD DHVRWHKTGR SKPIYDNGVK KGWKEIMVLY  180
KSSQRGGKPD RAHWVMHQYH LGEEEDEKDG DLVVSKIFYQ MPNKSTEVSG TETAYDEPDA  240
SASVIGPKTP KTNTPQPRHP NNSPCETEKN AFILQDQLLL QDEGEPTISI VSLEDDAVNP  300
AWCAGAEEQQ AVGGASRAQL NPDEPLLCRE DPNSLNDEAL FPLDYPILSQ CRNEILDRNQ  360
NTFYGLPDLH NVDLGTPPDL QLGDLQFGSQ ESLGSWLDRI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138KRKRRR
2134138RKRRR
3135139KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818203.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1
TrEMBLA0A2S3GQL10.0A0A2S3GQL1_9POAL; Uncharacterized protein
STRINGPavir.Aa01341.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-77NAC family protein