PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02367.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 296aa    MW: 31462.4 Da    PI: 8.5246
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02367.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-174292256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr+++ +gr++AeIrdp     +  r +lg+f taeeAa a++ a+++++g+
  Pahal.A02367.1 42 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFNTAEEAACAYDIAARAMRGN 92
                    69*******.**********84....35999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.74E-2741101No hitNo description
SMARTSM003807.1E-3542105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-3042100IPR001471AP2/ERF domain
PROSITE profilePS5103222.7614299IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2242100IPR016177DNA-binding domain
PfamPF008473.0E-104291IPR001471AP2/ERF domain
PRINTSPR003673.4E-94354IPR001471AP2/ERF domain
PRINTSPR003673.4E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEGAHLYAHT HGHHHHRSKR PTPPGVMDVD HVDGDASPKG ARYRGVRRRP WGRFAAEIRD  60
PMSKERRWLG TFNTAEEAAC AYDIAARAMR GNKARTNFPV HATAAAYWAW GAPHAAAGAG  120
PLDPILVHNL LMSSSHHGCR LLHHAGHGHP SPARPPTPAP APAPPPPASA SRARAAPSET  180
PSPAVASPPA APPGDMDVWG RVLRSGPPDA GLLQDALHGF YPGMLPRMEL RGADAVTEEQ  240
DRHEALAVAS PCAGIDADED GLMPQGLLED MIQYRAFLDV VAAPPAATRR GRRQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1939104268ATERF1
3gcc_A3e-1939104268ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9548771e-110EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822050.10.0ethylene-responsive transcription factor FZP-like
TrEMBLA0A2S3GQX50.0A0A2S3GQX5_9POAL; Uncharacterized protein
STRINGPavir.J29008.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.17e-11ERF family protein