PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02366.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 286aa    MW: 30649.3 Da    PI: 7.5849
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02366.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-174191256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g+
  Pahal.A02366.1 41 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDVAARAMRGN 91
                    69*******.**********84....35999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-264098No hitNo description
Gene3DG3DSA:3.30.730.101.9E-304198IPR001471AP2/ERF domain
PfamPF008471.2E-104190IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-224198IPR016177DNA-binding domain
PROSITE profilePS5103223.0644198IPR001471AP2/ERF domain
SMARTSM003805.0E-3441104IPR001471AP2/ERF domain
PRINTSPR003672.8E-94253IPR001471AP2/ERF domain
PRINTSPR003672.8E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEDAANVHLY AHAHHLHRSK RPPAAIMDED ADGDALPKGA RYRGVRRRPW GRFAAEIRDP  60
MSKERRWLGT FDTAEQAACA YDVAARAMRG NKARTNFPGH VAAASYWPWG APPPAAHTRN  120
PFLLHNLIMS SSPHHGLRLL HHAGHGHVVS PAPSRPPAPD AAAVPAPSPV SPPPGAPDDE  180
DVDDWGDLMR GEPADAGLLQ DALHGFYPAG ARPRGGASRN LAAGAGGRAA VPIKQERHGE  240
FIDVYDEEGE YPMMPQGLLG DVIQYPAFVE VVAAPSAPTR RGRRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1938101266ATERF1
3gcc_A5e-1938101266ATERF1
5wx9_A2e-182798172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9548771e-106EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801749.10.0ethylene-responsive transcription factor 3-like
TrEMBLA0A2T7F8F10.0A0A2T7F8F1_9POAL; Uncharacterized protein
STRINGSi020138m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.18e-23DORNROSCHEN-like