PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A02228.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 395aa MW: 41659.8 Da PI: 6.9258 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22 | 4.2e-07 | 180 | 201 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Pahal.A02228.2 180 FCEICGKGFRRDANLRMHMRAH 201 6*******************99 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 268 | 292 | 1 | 23 |
EEETTTT..EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg..ksFsrksnLkrHirtH 23 y C+ C+ k+F +L++H+r + Pahal.A02228.2 268 YACERCDgkKRFAVLADLRSHLRHC 292 89********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.38E-6 | 176 | 201 | No hit | No description |
PROSITE profile | PS50157 | 11.676 | 179 | 201 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0017 | 179 | 201 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.7E-6 | 179 | 201 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 181 | 201 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 76 | 230 | 263 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 20 | 268 | 291 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MDSTPGNPVA GAAGSRSSAI ASRGATAPPP LTMPGGEPSD ALLGAGAGGA GGADGDPRVA 60 LLRLAALGDR MAAVRGRIAA SISGEARPLS YADIQSVSSE ISSAAQLVVL NAASLLASSV 120 PFPAPPPPPT AAAPSPAPVR EIPATAASAQ EQRQEAAKGD GGYEVMELDA AELLAEHVHF 180 CEICGKGFRR DANLRMHMRA HGDRFKTLDA LSRPGQGKPK PPARDREVRF SCPFAGCNRN 240 RAHRRFRPLK SAVCARNHFR RSHCPKLYAC ERCDGKKRFA VLADLRSHLR HCGEEAQWRC 300 SCGTTFSRKD KLFGHLALFE GHTPAVTEPN KNVAAGPTEP ILDAMEEGGI EEGNCDQEED 360 EEGGYDPEFF KEWMEELKDG ASGSSWPGPA ATGH* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794886.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
TrEMBL | A0A2S3GQ73 | 0.0 | A0A2S3GQ73_9POAL; Uncharacterized protein | ||||
STRING | Si017455m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 5e-70 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A02228.2 |