PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02228.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 395aa    MW: 41659.8 Da    PI: 6.9258
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02228.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2224.2e-07180201223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+r  nL+ H+r H
  Pahal.A02228.1 180 FCEICGKGFRRDANLRMHMRAH 201
                     6*******************99 PP
2zf-C2H211.10.0012268292123
                     EEETTTT..EEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                     y C+ C+  k+F    +L++H+r +
  Pahal.A02228.1 268 YACERCDgkKRFAVLADLRSHLRHC 292
                     89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.38E-6176201No hitNo description
PROSITE profilePS5015711.676179201IPR007087Zinc finger, C2H2
SMARTSM003550.0017179201IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-6179201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280181201IPR007087Zinc finger, C2H2
SMARTSM0035576230263IPR015880Zinc finger, C2H2-like
SMARTSM0035520268291IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDSTPGNPVA GAAGSRSSAI ASRGATAPPP LTMPGGEPSD ALLGAGAGGA GGADGDPRVA  60
LLRLAALGDR MAAVRGRIAA SISGEARPLS YADIQSVSSE ISSAAQLVVL NAASLLASSV  120
PFPAPPPPPT AAAPSPAPVR EIPATAASAQ EQRQEAAKGD GGYEVMELDA AELLAEHVHF  180
CEICGKGFRR DANLRMHMRA HGDRFKTLDA LSRPGQGKPK PPARDREVRF SCPFAGCNRN  240
RAHRRFRPLK SAVCARNHFR RSHCPKLYAC ERCDGKKRFA VLADLRSHLR HCGEEAQWRC  300
SCGTTFSRKD KLFGHLALFE GHTPAVTEPN KNVAAGPTEP ILDAMEEGGI EEGNCDQEED  360
EEGGYDPEFF KEWMEELKDG ASGSSWPGPA ATGH*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794886.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A2S3GQ730.0A0A2S3GQ73_9POAL; Uncharacterized protein
STRINGSi017455m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.35e-70C2H2 family protein