PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02182.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 515aa    MW: 54394.7 Da    PI: 4.6793
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02182.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11322367555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR++i +++ +L+el+P++      + +Ka++L + ++Y+k Lq
  Pahal.A02182.1 322 HSIAERLRREKISDRMKNLQELVPNS-----NRTDKASMLDEIIDYVKFLQ 367
                     99***********************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-17315378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-12315371No hitNo description
PROSITE profilePS5088817.18317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-16319377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-9322367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-13323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGGFVDPFIP APAWPQDLVF TGSSWSDSAS APLADSAGTY IGASPDQDTE FHLQNGSSPV  60
LLNRSAKEML SPVELHEQFL QAQLQDDATQ GLNFEMDGAL MASTLGSVLS TSCAISLADS  120
APVVCSSNDS SGSEQSGLPQ FILGEQPVPV PAAWASTFTQ ISSLVGEETS QGFGFRALSN  180
GDLLREACAA DAKKYPQLGN VPSVPLQLHN DAEFNTGKML SFAPGSRQQN TNFEDLQISQ  240
KEFSGLHHLN LSSLVPWQLA SFNATGVTHN PKQSNEASGG KNGLNAAPLM ARSEVPNGSG  300
IAGNGAPKPR IRARRGQATD PHSIAERLRR EKISDRMKNL QELVPNSNRT DKASMLDEII  360
DYVKFLQLQV KVLSMSRLGA TEAVVPLLTE SQTESSSGGF LLSPRSGRQQ AGEGGLLGQP  420
ELRDGAAFEQ EVVQLMENNM TTAMQYLQSK GLCLMPIALA SAISDQKGTS SAAVRPANSA  480
AADEGGAGGD ERDATEMLRG LNAFGGAREM RSRA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749561e-160EU974956.1 Zea mays clone 461679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799151.10.0uncharacterized protein LOC112879044
TrEMBLA0A2S3GQ210.0A0A2S3GQ21_9POAL; Uncharacterized protein
STRINGPavir.Aa01634.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-56LJRHL1-like 3