PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A02085.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 852aa MW: 88417.8 Da PI: 10.2273

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A02085.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.9	6.2e-10	203	247	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 ++W++eEd l+ +v+++G g+W+ I ++ ++Rt+ q+ rw Pahal.A02085.1 203 KAWSKEEDADLAAGVQKYGEGNWDYILHKCKfdNTRTPDQLSQRW 247 58******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-11	196	252	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.742	197	256	IPR017930	Myb domain
SuperFamily	SSF46689	4.16E-12	200	253	IPR009057	Homeodomain-like
SMART	SM00717	9.1E-7	201	253	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-7	203	247	IPR001005	SANT/Myb domain
CDD	cd11660	1.31E-14	208	252	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence Send to blast
MAAAAAGAGK GKRKRSLSED DVYLLLHRYA PGTILTALQE VAQHAEGRRI DWRAVVGKSA 60 TGITSAREYQ MLWRHFAYNH VLDDTVDAGD QPLGDDSDLE LELEPVPNPT KEALSEASAL 120 AKALISGSSR EQASGQRLNL DAPVLNAPNE KTVRVPSEKQ LAQNHRITNI TGPVSNSKQA 180 SHLGPSPGSL DPNGPSKKKK KPKAWSKEED ADLAAGVQKY GEGNWDYILH KCKFDNTRTP 240 DQLSQRWALI CKRPGGSTKP ASTKHATVAS SEERKDALKA LSIAVGPMRR SSMLRPGAQQ 300 QGIQHKSTVF APKIPEGRSA AAPSPAPALP VPVPVPVPVP MPLPVKAPVK SPVPQGQQAP 360 VQRAPPKSAN ASNKTRKKQS PQPSPIIGPS SIQAAAIAAG GRIAPALTAA NFLKVAQSAH 420 IRSQVTGSSK PSASTKAQSV VVEPGTQPGS IQHLEPLNTS APKSGPSVLT THATEQVHGA 480 SEVAVVNPPG PSAGAHPLET NKALSTTPVP VSCDSEEKED DSTFCVITID DLFPEDAVQL 540 ETVDLEAKPE IADEKAKQLE TVDPVDPKAK QPETVDPKAK QPETADPKAK QPETADPKAK 600 QLDTLNPKVE MVDPKDKDML EFDQFVASQG GAVNTDHLDK SNRSAAQAQA LVGSQKKQVK 660 LVPTIGKGNP VSAGVPATVK RAKTSIPHLV NPVPAGSPRG IVGTVNANAP NKTLVRKATT 720 LVPAGVRAPL LKKHATNGKG YQVMQPSTGS GVPASSQASV AVNGASKVNP PSSGGQASSV 780 VNIGSRANPP YSGQASAVMN IGSKANPPSS GQASVVVNGA NRAANPPSSG KASAALSGAA 840 NMANPPAAPK Q*

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence Send to blast

MAAAAAGAGK GKRKRSLSED DVYLLLHRYA PGTILTALQE VAQHAEGRRI DWRAVVGKSA  60
TGITSAREYQ MLWRHFAYNH VLDDTVDAGD QPLGDDSDLE LELEPVPNPT KEALSEASAL  120
AKALISGSSR EQASGQRLNL DAPVLNAPNE KTVRVPSEKQ LAQNHRITNI TGPVSNSKQA  180
SHLGPSPGSL DPNGPSKKKK KPKAWSKEED ADLAAGVQKY GEGNWDYILH KCKFDNTRTP  240
DQLSQRWALI CKRPGGSTKP ASTKHATVAS SEERKDALKA LSIAVGPMRR SSMLRPGAQQ  300
QGIQHKSTVF APKIPEGRSA AAPSPAPALP VPVPVPVPVP MPLPVKAPVK SPVPQGQQAP  360
VQRAPPKSAN ASNKTRKKQS PQPSPIIGPS SIQAAAIAAG GRIAPALTAA NFLKVAQSAH  420
IRSQVTGSSK PSASTKAQSV VVEPGTQPGS IQHLEPLNTS APKSGPSVLT THATEQVHGA  480
SEVAVVNPPG PSAGAHPLET NKALSTTPVP VSCDSEEKED DSTFCVITID DLFPEDAVQL  540
ETVDLEAKPE IADEKAKQLE TVDPVDPKAK QPETVDPKAK QPETADPKAK QPETADPKAK  600
QLDTLNPKVE MVDPKDKDML EFDQFVASQG GAVNTDHLDK SNRSAAQAQA LVGSQKKQVK  660
LVPTIGKGNP VSAGVPATVK RAKTSIPHLV NPVPAGSPRG IVGTVNANAP NKTLVRKATT  720
LVPAGVRAPL LKKHATNGKG YQVMQPSTGS GVPASSQASV AVNGASKVNP PSSGGQASSV  780
VNIGSRANPP YSGQASAVMN IGSKANPPSS GQASVVVNGA NRAANPPSSG KASAALSGAA  840
NMANPPAAPK Q*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812020.1	0.0	nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
TrEMBL	A0A2S3GPX6	0.0	A0A2S3GPX6_9POAL; Uncharacterized protein
STRING	Pavir.Aa01714.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4684	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	3e-27	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Pahal.A02085.1