PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A02070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 34015.6 Da PI: 8.5242 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.9 | 1.1e-10 | 114 | 162 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +ah + Er RR+r+++ f++L l+P+ + +K++Ka+ + +++++I+ L+ Pahal.A02070.1 114 KAHIITERERRKRMKDLFSNLHALMPHvP-----EKVDKATLVGETIHFIRALE 162 68*************************77.....9****************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.77E-13 | 111 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.287 | 111 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-13 | 114 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.46E-10 | 114 | 163 | No hit | No description |
Pfam | PF00010 | 3.9E-8 | 114 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-6 | 117 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MAQNGPHDHQ AAAASDERIF TPPTTMTFLG PAENRNGGSR IGSPVGMDAS KGKDVVLPNA 60 VQGGEHGSAG GGEANADKSK GKHPAVGDAA TAAAGDGFPK GKGSLAADDG GDTKAHIITE 120 RERRKRMKDL FSNLHALMPH VPEKVDKATL VGETIHFIRA LEQTKAQLER RKQEQALARQ 180 AAAEAVVSAL LSAPQTAQGM AAMSNGWGPA VPHHQQPLAA AAAPPSLATA TGPAGFQTWS 240 APNVVLSVSN EKAIINVCLP RQPRMLTLVM SVLSKHAIDV ITAHVAADGP RSLITIYTRV 300 NVAGGESPSA EDIYKLAVSE IMVWLTS* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821631.1 | 0.0 | transcription factor bHLH95-like | ||||
TrEMBL | A0A2S3GPS1 | 0.0 | A0A2S3GPS1_9POAL; Uncharacterized protein | ||||
STRING | Si017798m | 1e-168 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2005 | 36 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 4e-16 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A02070.1 |