PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A01950.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 461aa MW: 53549.4 Da PI: 8.6329

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A01950.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.4	2.7e-24	28	117	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk++GF vrk +++k+ ++g+ ++++fvCskeg r+e+++ +ek +++ + tr+gC+a++ k+++dgk++v+k+ + H+H+l+ Pahal.A01950.1 28 DFYRAYAKHMGFGVRKWTQHKR-TDGTAIWKRFVCSKEGWRKEQESGeDEKPKTKVKITRCGCEAMIGFKRRDDGKYVVAKFISYHTHDLV 117 6************9988876.8999*********999988834555667789*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-21	28	117	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.446	369	401	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.1E-4	376	403	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
GSIYEPNCKD GLQPTIGMVF DSWEQGEDFY RAYAKHMGFG VRKWTQHKRT DGTAIWKRFV 60 CSKEGWRKEQ ESGEDEKPKT KVKITRCGCE AMIGFKRRDD GKYVVAKFIS YHTHDLVSPR 120 MRHLIKSNRE VTSAVKCALF TCHKASIALL QHFGCSCRER LRLTHIFWAD STCIRNYKLF 180 GDVMSFDSTY RTNRYDLVFT PFTGVNHHIL CMWHILNKLP EKLGRDFTKD EEFMKRFGIC 240 VWCSETPDEF ELSWASIIAD YGLGNNVWLN DKYALRESWI PAYFVGYSLG GILRTTSRSE 300 SENAFFGRFT SWSIEKHARE VYTHTIFEIF QQEVVSARDN CVVQGLEQVG EEKITRIRDS 360 RGRIREVRYN ICSKVVNCSC KLFESIGILC SHTIVVLKAE LYNEIPINYV LDRWTKMATR 420 KRVLDAKEEK MKYLHKAVAE AVDHVLKMEP SSETSKVSEF *

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

GSIYEPNCKD GLQPTIGMVF DSWEQGEDFY RAYAKHMGFG VRKWTQHKRT DGTAIWKRFV  60
CSKEGWRKEQ ESGEDEKPKT KVKITRCGCE AMIGFKRRDD GKYVVAKFIS YHTHDLVSPR  120
MRHLIKSNRE VTSAVKCALF TCHKASIALL QHFGCSCRER LRLTHIFWAD STCIRNYKLF  180
GDVMSFDSTY RTNRYDLVFT PFTGVNHHIL CMWHILNKLP EKLGRDFTKD EEFMKRFGIC  240
VWCSETPDEF ELSWASIIAD YGLGNNVWLN DKYALRESWI PAYFVGYSLG GILRTTSRSE  300
SENAFFGRFT SWSIEKHARE VYTHTIFEIF QQEVVSARDN CVVQGLEQVG EEKITRIRDS  360
RGRIREVRYN ICSKVVNCSC KLFESIGILC SHTIVVLKAE LYNEIPINYV LDRWTKMATR  420
KRVLDAKEEK MKYLHKAVAE AVDHVLKMEP SSETSKVSEF *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A446QG75	1e-139	A0A446QG75_TRITD; Uncharacterized protein
STRING	Pavir.J07709.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-49	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.A01950.1