PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01861.14
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 406aa    MW: 46656 Da    PI: 5.2949
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01861.14genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07255297145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+W++ + + ++++ +q+G++ ++ I + ++  +t+ q++ ++ 
  Pahal.A01861.14 255 RGKWSKSDTDVFYQGLRQFGSD-FAMIQQLLP-DKTRQQVRAKFK 297
                      89********************.*********.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.39E-10246303IPR009057Homeodomain-like
PfamPF159638.5E-24248316No hitNo description
Gene3DG3DSA:1.10.10.602.5E-5252301IPR009057Homeodomain-like
PROSITE profilePS512939.022253304IPR017884SANT domain
SMARTSM007178.1E-8254302IPR001005SANT/Myb domain
CDDcd001671.29E-4257298No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGNFSNSCND KLTDENLRNL SQQTVEKEHN DNESWYHEGE PLDHAVEQLP KSGIGENRSS  60
MKLRSRKKSQ KVGTPKHTDD YFDEDCVEPS LVEEDNDSGD DYTAGTNRKV RKKSRDDVEE  120
PQQQNVQKDK SQVSSRGRKR TLKDASAEKP EKKLTHRIRQ RRAKEVKTLL EKPHEINPMK  180
LSAAHLRLLQ EARECVNAKE NPSGPSSNTS FQFHDMDDLD YGDEEARNFD NDRTQNHVQD  240
TKKLNYHSYM NKQTRGKWSK SDTDVFYQGL RQFGSDFAMI QQLLPDKTRQ QVRAKFKTEE  300
KKNPLLVHDA IIHRSGVILL NSDNLYFKKV IKNLNIEDVA QQEINNTHKQ DGASSEPGKE  360
DALDDCIHEE DDSNWLDEEP GVQKPEEHAS GNDDDGDLGD VFDWY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794592e-32HF679459.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB53 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820634.10.0transcription factor TFIIIB component B''-like isoform X4
TrEMBLA0A2S3GNW30.0A0A2S3GNW3_9POAL; Uncharacterized protein
TrEMBLA0A2T8KVG30.0A0A2T8KVG3_9POAL; Uncharacterized protein
TrEMBLA0A2T8KVI30.0A0A2T8KVI3_9POAL; Uncharacterized protein
STRINGPavir.Aa02686.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.14e-32MYB_related family protein